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The map label for this gene is yhjC [H]

Identifier: 167623149

GI number: 167623149

Start: 1475698

End: 1476600

Strand: Direct

Name: yhjC [H]

Synonym: Shal_1215

Alternate gene names: 167623149

Gene position: 1475698-1476600 (Clockwise)

Preceding gene: 167623145

Following gene: 167623152

Centisome position: 28.23

GC content: 44.74

Gene sequence:

>903_bases
ATGAGTACCAACTTTGGTTTGGAATTACAGCTGATCTATCAATTTGTGCATCTGGTGAATGCGGGCAGCTTTTCTCAGGC
CGCTAAAGAGCTCGATATGCCGATTGCCACAGTGAGCCGTAAGCTGACTAAGTTGGAGACGGTATTAGATAAACAGTTAT
TGATGCGTAATACTCGTAAGCTGAGGCTAACTGAAGAGGGCATTGCGCTGTTTCAGCAGTATCAGTCGATTATCTCTCAG
TTTGACAGCATCAGCGGGGTTACGGTTGATAAGCCTGAGGGGACGTTACGTATTGCTGCCCCTGTGTCGATTATCTCGAT
GATTTTTATCAAGGCGCTCAATGAGTTCTGCGAGCAGTATCCGGATATTCAGTTGCATATTACGCAAAACAATAACGTGA
TCGATTTAATTGATGAAGGTGTCGATGTAGCGATAGTGGGCGGTACCCAACCAGATTCATCTTGGATCTCTAGCTCATTG
GGTGTGCTTAATTATGGTTTATTTGCCTCTCAACAGTATATCGACAGTGCGCCTGTACTCACTCACCCCCAAGAGCTTGC
TGAGCACGCCTTAATTAAAGTATGGCCACTCTATAATTGGTCGCTAAAGCACCCAAATGGTGGATCATTTTATTATGATG
GTAAAGCCAAGCTGACATTAAGCGATTTGCATGGCGCAGTGGAGGCGACGGTTGATCACGGCGGCATTCTCTATGGACCG
GAACTCTTTGTTAAAGAAGAGCTCAGAGCCGGGAAATTACAGAGATTACTGCCAGAGTGGATTGGTGAAAAAAGACGAAT
TTCGATTTTATATCATCAGCGCAGCCATCAACCCCTAAAGGTGAAACTGTTTATCGAATTTATGCAATCTAAGGCGGAAG
GTTTATTCTCGATGCATAGCTAG

Upstream 100 bases:

>100_bases
GTATGAGGGCTAGGCCTAGTCTTAGCTTGAGCTTGAGCTTGAGCTTGAGCTTGAGCCTGAGTTCAGTTCCGTTTTATCTT
AAGTAGTAGGATTTATCTCC

Downstream 100 bases:

>100_bases
CTTAAGGCGGATCATAAATGTATTTGAGTAGAGACTTTAGCTAGATATTAGCCTCTGTGTGGGGGGAGGGGGAGCGCAAA
ACGATGAGTCGTAATGCGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSTNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQYQSIISQ
FDSISGVTVDKPEGTLRIAAPVSIISMIFIKALNEFCEQYPDIQLHITQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSL
GVLNYGLFASQQYIDSAPVLTHPQELAEHALIKVWPLYNWSLKHPNGGSFYYDGKAKLTLSDLHGAVEATVDHGGILYGP
ELFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAEGLFSMHS

Sequences:

>Translated_300_residues
MSTNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQYQSIISQ
FDSISGVTVDKPEGTLRIAAPVSIISMIFIKALNEFCEQYPDIQLHITQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSL
GVLNYGLFASQQYIDSAPVLTHPQELAEHALIKVWPLYNWSLKHPNGGSFYYDGKAKLTLSDLHGAVEATVDHGGILYGP
ELFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAEGLFSMHS
>Mature_299_residues
STNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRKLRLTEEGIALFQQYQSIISQF
DSISGVTVDKPEGTLRIAAPVSIISMIFIKALNEFCEQYPDIQLHITQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSLG
VLNYGLFASQQYIDSAPVLTHPQELAEHALIKVWPLYNWSLKHPNGGSFYYDGKAKLTLSDLHGAVEATVDHGGILYGPE
LFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAEGLFSMHS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=284, Percent_Identity=29.2253521126761, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=27.9151943462898, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1786401, Length=281, Percent_Identity=28.4697508896797, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=24.6575342465753, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=25.8389261744966, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=24.1496598639456, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=26.6666666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=25.9842519685039, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788706, Length=272, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790011, Length=308, Percent_Identity=23.7012987012987, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789173, Length=278, Percent_Identity=24.1007194244604, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33713; Mature: 33582

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRK
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
LRLTEEGIALFQQYQSIISQFDSISGVTVDKPEGTLRIAAPVSIISMIFIKALNEFCEQY
EEECHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHC
PDIQLHITQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSLGVLNYGLFASQQYIDSAPVL
CCEEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
THPQELAEHALIKVWPLYNWSLKHPNGGSFYYDGKAKLTLSDLHGAVEATVDHGGILYGP
CCHHHHHHHHEEEEEECCEEEECCCCCCCEEECCCEEEEHHHHCCHHEEEECCCCEEECC
ELFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAEGLFSMHS
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STNFGLELQLIYQFVHLVNAGSFSQAAKELDMPIATVSRKLTKLETVLDKQLLMRNTRK
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
LRLTEEGIALFQQYQSIISQFDSISGVTVDKPEGTLRIAAPVSIISMIFIKALNEFCEQY
EEECHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHC
PDIQLHITQNNNVIDLIDEGVDVAIVGGTQPDSSWISSSLGVLNYGLFASQQYIDSAPVL
CCEEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
THPQELAEHALIKVWPLYNWSLKHPNGGSFYYDGKAKLTLSDLHGAVEATVDHGGILYGP
CCHHHHHHHHEEEEEECCEEEECCCCCCCEEECCCEEEEHHHHCCHHEEEECCCCEEECC
ELFVKEELRAGKLQRLLPEWIGEKRRISILYHQRSHQPLKVKLFIEFMQSKAEGLFSMHS
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]