| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623131
Identifier: 167623131
GI number: 167623131
Start: 1453055
End: 1453573
Strand: Reverse
Name: 167623131
Synonym: Shal_1197
Alternate gene names: NA
Gene position: 1453573-1453055 (Counterclockwise)
Preceding gene: 167623132
Following gene: 167623130
Centisome position: 27.81
GC content: 41.43
Gene sequence:
>519_bases GTGGCATATGTAACCTGCGTAACATGCTATTTTAATGAGTATACAGTGAAGAAAATTGCCCTATTTGTCGATGTACAAAA CATCTATTACACCTGCCGCCAAGCATATGGCCGTCAATTCAACTACCGCAAACTCTGGCAACACTTGGGCTATGAAGGCA ACATTAGCGCCGCCACCGCCTACGCGATTCATCGTGGCGATGATGGTCAACTTAAGTTTCAAGATGCATTAAAACATATT GGGTTTGAAGTAAAACTTAAGCCTTTTATTCAACGTAGTGACGGTTCAGCTAAAGGGGATTGGGACGTAGGCATCACCAT AGATATCATGGAAGCGGCAAGTGAGGTCGATTGCGTTATCTTGCTATCTGGAGATGGCGACTTTGATCTTTTAATGCAAA AAATTAAGCAAAAATATGGTATTGAGACACAAGTTTATGGCGTACCAAGCTTAACCGCCAAATCACTCATCGACTCTGTA GAGCAATTTCACGAAATTGATGACAGTTTATTACTCTAA
Upstream 100 bases:
>100_bases ACTTCGTATCCTCTATAGCCTACGCGTTAGTCGTGTAAAAGGCTGCGGGAAAACCTTTTCTATGCGATAGTGTCTTTCTA TCGAATTACAGCCCTTTATA
Downstream 100 bases:
>100_bases CTGACCTTAGGTAATTATATAACCTAAATCAACGGATCTGCTCACTAAGGTTAAATCAGAGCCTATGGTAACCTAAAGCA CTGATATAAAACAGAATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MAYVTCVTCYFNEYTVKKIALFVDVQNIYYTCRQAYGRQFNYRKLWQHLGYEGNISAATAYAIHRGDDGQLKFQDALKHI GFEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDCVILLSGDGDFDLLMQKIKQKYGIETQVYGVPSLTAKSLIDSV EQFHEIDDSLLL
Sequences:
>Translated_172_residues MAYVTCVTCYFNEYTVKKIALFVDVQNIYYTCRQAYGRQFNYRKLWQHLGYEGNISAATAYAIHRGDDGQLKFQDALKHI GFEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDCVILLSGDGDFDLLMQKIKQKYGIETQVYGVPSLTAKSLIDSV EQFHEIDDSLLL >Mature_171_residues AYVTCVTCYFNEYTVKKIALFVDVQNIYYTCRQAYGRQFNYRKLWQHLGYEGNISAATAYAIHRGDDGQLKFQDALKHIG FEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDCVILLSGDGDFDLLMQKIKQKYGIETQVYGVPSLTAKSLIDSVE QFHEIDDSLLL
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19514; Mature: 19383
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYVTCVTCYFNEYTVKKIALFVDVQNIYYTCRQAYGRQFNYRKLWQHLGYEGNISAATA CCEEEEEEEECCCHHHEEEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEE YAIHRGDDGQLKFQDALKHIGFEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDCVI EEEEECCCCCEEHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEE LLSGDGDFDLLMQKIKQKYGIETQVYGVPSLTAKSLIDSVEQFHEIDDSLLL EEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AYVTCVTCYFNEYTVKKIALFVDVQNIYYTCRQAYGRQFNYRKLWQHLGYEGNISAATA CEEEEEEEECCCHHHEEEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEE YAIHRGDDGQLKFQDALKHIGFEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDCVI EEEEECCCCCEEHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEE LLSGDGDFDLLMQKIKQKYGIETQVYGVPSLTAKSLIDSVEQFHEIDDSLLL EEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA