| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is hemH2 [H]
Identifier: 167623109
GI number: 167623109
Start: 1427710
End: 1428723
Strand: Direct
Name: hemH2 [H]
Synonym: Shal_1175
Alternate gene names: 167623109
Gene position: 1427710-1428723 (Clockwise)
Preceding gene: 167623108
Following gene: 167623114
Centisome position: 27.31
GC content: 47.44
Gene sequence:
>1014_bases TTGGCTAAGTATTTAGGGCTGACCAAAGACGTTGGACATAAAAATCGCGGTAAAACAGGCGTATTGTTAGTTAATTTAGG CACTCCCGATGAGCCGACTCCATCGGCTGTTAGGCGCTATCTAGCGGAGTTCCTCGCCGACCCACGTGTCATTGAGATCC CAAAGCTAGTTTGGATGTGTATTTTACACGGCATCATCTTACGTGTGCGCCCTGCAAAATCGGCTGCGCTTTATCGGCAA GTGTGGACTGAGCAGGGCTCTCCCTTGATGGATATCACCCGCCGCCAAAGCCAAAAGTTGGCTGAGTATTTTGCAAAAGA GGGCGATGAGCTGTCGGTAGATTTTTGCATGCGTTACGGTAAACCGTCGGTATCATCGACGCTACAAAGAATGCATCAAG AGGGAGTCGATAAGCTGGTGGTGTTGCCGCTTTACCCGCAATATTCGGCACCTACAACGGCCTCAGCTTTCGATGCTATT GCCAAAGAGCTTATGAGCTGGCGTTATCTGCCTGCGCTGCATTTCATCAATACTTATCATGATCATCCTGACTTTATTGA TGCGTTAGCGGCATCGATTGCTAAAGACTTTGAGATTAATGGTCGGCCACAAAAGTTAGTGCTCTCATACCATGGTATGC CGGAGCGTAATTTGCATTTGGGCGACCCCTATTACTGTTTTTGTATGAAGACCACTAAGCTGGTGGTTGAAAAGCTTGGT TTGAGTGAAGAGCAATATATTACGACATTCCAATCTCGTTTCGGTAAAGCCAAGTGGCTAACACCTTATACCGATGCCAC CATGGAAGCCTTACCTGGGCAAGGCATAAAAGACATTGCGGTTGTATGCCCAGCCTTTAGTGCCGACTGCCTAGAAACGT TAGAGGAGATCGCCGGTGAGAACCGCCATATCTTTGAGGAGGCGGGAGGTGATAAGTATCGTTATATTGCCGCGCTTAAT GACGATGATGCCCATATTAAGATGATGGCGAACATTGTTAGGCCACATATTTAA
Upstream 100 bases:
>100_bases GATTATTAGAAGACTGGCAATACCTTGTATTGCCAGTTTTTTTTGAGTCATAAAGAGCGTTGATTGTATCAACAGATTTT CTATGAGTTAAGGAGTTATC
Downstream 100 bases:
>100_bases GTCATATAGCTAAGTCTTATGTTTAGGCTGTCTACTTAGTGAGAAAAGGGAGCCACTATGCAAATAGTGGCTCCCTTAAT TATTAAGTCTTTAGGGGCGC
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase 2; Protoheme ferro-lyase 2 [H]
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MAKYLGLTKDVGHKNRGKTGVLLVNLGTPDEPTPSAVRRYLAEFLADPRVIEIPKLVWMCILHGIILRVRPAKSAALYRQ VWTEQGSPLMDITRRQSQKLAEYFAKEGDELSVDFCMRYGKPSVSSTLQRMHQEGVDKLVVLPLYPQYSAPTTASAFDAI AKELMSWRYLPALHFINTYHDHPDFIDALAASIAKDFEINGRPQKLVLSYHGMPERNLHLGDPYYCFCMKTTKLVVEKLG LSEEQYITTFQSRFGKAKWLTPYTDATMEALPGQGIKDIAVVCPAFSADCLETLEEIAGENRHIFEEAGGDKYRYIAALN DDDAHIKMMANIVRPHI
Sequences:
>Translated_337_residues MAKYLGLTKDVGHKNRGKTGVLLVNLGTPDEPTPSAVRRYLAEFLADPRVIEIPKLVWMCILHGIILRVRPAKSAALYRQ VWTEQGSPLMDITRRQSQKLAEYFAKEGDELSVDFCMRYGKPSVSSTLQRMHQEGVDKLVVLPLYPQYSAPTTASAFDAI AKELMSWRYLPALHFINTYHDHPDFIDALAASIAKDFEINGRPQKLVLSYHGMPERNLHLGDPYYCFCMKTTKLVVEKLG LSEEQYITTFQSRFGKAKWLTPYTDATMEALPGQGIKDIAVVCPAFSADCLETLEEIAGENRHIFEEAGGDKYRYIAALN DDDAHIKMMANIVRPHI >Mature_336_residues AKYLGLTKDVGHKNRGKTGVLLVNLGTPDEPTPSAVRRYLAEFLADPRVIEIPKLVWMCILHGIILRVRPAKSAALYRQV WTEQGSPLMDITRRQSQKLAEYFAKEGDELSVDFCMRYGKPSVSSTLQRMHQEGVDKLVVLPLYPQYSAPTTASAFDAIA KELMSWRYLPALHFINTYHDHPDFIDALAASIAKDFEINGRPQKLVLSYHGMPERNLHLGDPYYCFCMKTTKLVVEKLGL SEEQYITTFQSRFGKAKWLTPYTDATMEALPGQGIKDIAVVCPAFSADCLETLEEIAGENRHIFEEAGGDKYRYIAALND DDAHIKMMANIVRPHI
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=339, Percent_Identity=28.3185840707965, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI60499025, Length=334, Percent_Identity=28.4431137724551, Blast_Score=108, Evalue=6e-24, Organism=Escherichia coli, GI1786681, Length=316, Percent_Identity=48.1012658227848, Blast_Score=300, Evalue=1e-82, Organism=Saccharomyces cerevisiae, GI6324750, Length=339, Percent_Identity=25.9587020648968, Blast_Score=99, Evalue=7e-22, Organism=Drosophila melanogaster, GI17864156, Length=333, Percent_Identity=27.3273273273273, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI24651774, Length=265, Percent_Identity=26.4150943396226, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI45552018, Length=168, Percent_Identity=27.9761904761905, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 38043; Mature: 37912
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKYLGLTKDVGHKNRGKTGVLLVNLGTPDEPTPSAVRRYLAEFLADPRVIEIPKLVWMC CCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH ILHGIILRVRPAKSAALYRQVWTEQGSPLMDITRRQSQKLAEYFAKEGDELSVDFCMRYG HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCC KPSVSSTLQRMHQEGVDKLVVLPLYPQYSAPTTASAFDAIAKELMSWRYLPALHFINTYH CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC DHPDFIDALAASIAKDFEINGRPQKLVLSYHGMPERNLHLGDPYYCFCMKTTKLVVEKLG CCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHC LSEEQYITTFQSRFGKAKWLTPYTDATMEALPGQGIKDIAVVCPAFSADCLETLEEIAGE CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCC NRHIFEEAGGDKYRYIAALNDDDAHIKMMANIVRPHI CCEEHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCC >Mature Secondary Structure AKYLGLTKDVGHKNRGKTGVLLVNLGTPDEPTPSAVRRYLAEFLADPRVIEIPKLVWMC CCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH ILHGIILRVRPAKSAALYRQVWTEQGSPLMDITRRQSQKLAEYFAKEGDELSVDFCMRYG HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCC KPSVSSTLQRMHQEGVDKLVVLPLYPQYSAPTTASAFDAIAKELMSWRYLPALHFINTYH CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC DHPDFIDALAASIAKDFEINGRPQKLVLSYHGMPERNLHLGDPYYCFCMKTTKLVVEKLG CCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHC LSEEQYITTFQSRFGKAKWLTPYTDATMEALPGQGIKDIAVVCPAFSADCLETLEEIAGE CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCC NRHIFEEAGGDKYRYIAALNDDDAHIKMMANIVRPHI CCEEHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]