| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623102
Identifier: 167623102
GI number: 167623102
Start: 1422316
End: 1422750
Strand: Reverse
Name: 167623102
Synonym: Shal_1168
Alternate gene names: NA
Gene position: 1422750-1422316 (Counterclockwise)
Preceding gene: 167623103
Following gene: 167623101
Centisome position: 27.22
GC content: 42.76
Gene sequence:
>435_bases ATGGTCCGTGCTTTAACCACTATGCTAATGCTCTGCTTTTGCCTAAGCAGCAACGCATTTGCCGAACAAAAAGAAAAAGT GGGTAACTACGATATCCATTATGTCGCGCTTAGCAGCACCTTTCTAACCCCAAGTATTGCCAAGTCTTACGGGATCCAGC GCAGTAGCTACACTGGGATTATTAATATTGCCGTGCTCGACACCAGCGTCAAAGGTAACCCTGCCGTCCCTATTGAGATT TCAGGTGTCGCCAATAACTTACTCGATGCTAGAGTCGATTTAAAATTTAGAGAAATTCGCGAAGGTGATTCTATCTATTA CGTCGCCGAAGTTCCCTACCGTAATGATCAAGAGATCAACTTTAAAATCGCAGTGAAGTACGGCAAAAAACTTAATACCA CACTTAATTTCAAACAGAAGTTCTACGTCGAATAG
Upstream 100 bases:
>100_bases TACAAAACCTTTTGTAACCTTATAGTTATCATTACAATAGCGCATTGAGTTCAACTAAGCTCTATACTGTTAACAAGATA TCTTCTTAAGGAAAACAAAT
Downstream 100 bases:
>100_bases GCGCGAGTGAAAATTAAAAAACACAGGGGCCTAGCGCCCCTTTTTTTATACGCTTTGACTACCGAAACCCGCTTATCTCG GCTATCATTGCCGCCATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MVRALTTMLMLCFCLSSNAFAEQKEKVGNYDIHYVALSSTFLTPSIAKSYGIQRSSYTGIINIAVLDTSVKGNPAVPIEI SGVANNLLDARVDLKFREIREGDSIYYVAEVPYRNDQEINFKIAVKYGKKLNTTLNFKQKFYVE
Sequences:
>Translated_144_residues MVRALTTMLMLCFCLSSNAFAEQKEKVGNYDIHYVALSSTFLTPSIAKSYGIQRSSYTGIINIAVLDTSVKGNPAVPIEI SGVANNLLDARVDLKFREIREGDSIYYVAEVPYRNDQEINFKIAVKYGKKLNTTLNFKQKFYVE >Mature_144_residues MVRALTTMLMLCFCLSSNAFAEQKEKVGNYDIHYVALSSTFLTPSIAKSYGIQRSSYTGIINIAVLDTSVKGNPAVPIEI SGVANNLLDARVDLKFREIREGDSIYYVAEVPYRNDQEINFKIAVKYGKKLNTTLNFKQKFYVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16220; Mature: 16220
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRALTTMLMLCFCLSSNAFAEQKEKVGNYDIHYVALSSTFLTPSIAKSYGIQRSSYTGI CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCEE INIAVLDTSVKGNPAVPIEISGVANNLLDARVDLKFREIREGDSIYYVAEVPYRNDQEIN EEEEEEEECCCCCCCCEEEECCCCCCHHHHEECEEEEEECCCCCEEEEEECCCCCCCEEE FKIAVKYGKKLNTTLNFKQKFYVE EEEEEEECCCCCCEECCCEEEECC >Mature Secondary Structure MVRALTTMLMLCFCLSSNAFAEQKEKVGNYDIHYVALSSTFLTPSIAKSYGIQRSSYTGI CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCEE INIAVLDTSVKGNPAVPIEISGVANNLLDARVDLKFREIREGDSIYYVAEVPYRNDQEIN EEEEEEEECCCCCCCCEEEECCCCCCHHHHEECEEEEEECCCCCEEEEEECCCCCCCEEE FKIAVKYGKKLNTTLNFKQKFYVE EEEEEEECCCCCCEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA