| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yggL [H]
Identifier: 167623090
GI number: 167623090
Start: 1407261
End: 1407587
Strand: Direct
Name: yggL [H]
Synonym: Shal_1156
Alternate gene names: 167623090
Gene position: 1407261-1407587 (Clockwise)
Preceding gene: 167623089
Following gene: 167623091
Centisome position: 26.92
GC content: 44.04
Gene sequence:
>327_bases ATGGCAGCAAACCGTAGCCGTCGCTTACGTAAGAAATTACGCGTTGATGAGTTCCAAGAGTTTGGATTTGACGTTAACTG GACCTTTAATGAGTCAGTAACTGAAGAGCAAATTGATGCAATCGTTGATCAGTTCATCGATGAAGTCATTGAACCAGCAG GTCTTGGTTATCACGGTGGCGGGCACAAAGAGTGGGAAGGCATTATTGCTACTCAAGATATTGGCAAATGTACCGAAGAG AACCGAGCTGCAGTTAAAGCATTCTTCGATGCTCAACCTGTATCTGATCTAGAAATTGGTGAGCTTTTCGATATCTGGTG GGGCTAA
Upstream 100 bases:
>100_bases GCCACCGTTTAGGTCATGGTGTTTGGGATCTTATGTTTGAGCGCGTTTAAGCGTTAAACCGAATTTATACACTGTAAATA AGCTATCTAGGAGAACAACC
Downstream 100 bases:
>100_bases TGCCTGAATTGGCATTACTTGAAGAGATCGTCGAAAAAGTACGACCTCTTTTAGGACAGGGTAAAGTGGCTGACTATATT CCAGCCCTTGCCCAAGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MAANRSRRLRKKLRVDEFQEFGFDVNWTFNESVTEEQIDAIVDQFIDEVIEPAGLGYHGGGHKEWEGIIATQDIGKCTEE NRAAVKAFFDAQPVSDLEIGELFDIWWG
Sequences:
>Translated_108_residues MAANRSRRLRKKLRVDEFQEFGFDVNWTFNESVTEEQIDAIVDQFIDEVIEPAGLGYHGGGHKEWEGIIATQDIGKCTEE NRAAVKAFFDAQPVSDLEIGELFDIWWG >Mature_107_residues AANRSRRLRKKLRVDEFQEFGFDVNWTFNESVTEEQIDAIVDQFIDEVIEPAGLGYHGGGHKEWEGIIATQDIGKCTEEN RAAVKAFFDAQPVSDLEIGELFDIWWG
Specific function: Unknown
COG id: COG3171
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0341 [H]
Homologues:
Organism=Escherichia coli, GI87082190, Length=107, Percent_Identity=55.1401869158878, Blast_Score=131, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007416 [H]
Pfam domain/function: PF04320 DUF469 [H]
EC number: NA
Molecular weight: Translated: 12350; Mature: 12219
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAANRSRRLRKKLRVDEFQEFGFDVNWTFNESVTEEQIDAIVDQFIDEVIEPAGLGYHGG CCCCHHHHHHHHHCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC GHKEWEGIIATQDIGKCTEENRAAVKAFFDAQPVSDLEIGELFDIWWG CCCCCCCEECCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC >Mature Secondary Structure AANRSRRLRKKLRVDEFQEFGFDVNWTFNESVTEEQIDAIVDQFIDEVIEPAGLGYHGG CCCHHHHHHHHHCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC GHKEWEGIIATQDIGKCTEENRAAVKAFFDAQPVSDLEIGELFDIWWG CCCCCCCEECCCCHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2001994 [H]