| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623069
Identifier: 167623069
GI number: 167623069
Start: 1379009
End: 1379530
Strand: Direct
Name: 167623069
Synonym: Shal_1135
Alternate gene names: NA
Gene position: 1379009-1379530 (Clockwise)
Preceding gene: 167623068
Following gene: 167623070
Centisome position: 26.38
GC content: 45.21
Gene sequence:
>522_bases ATGGAGACCAGAGAGAAAGGACTTTCTTTAATTGAAGTACTCGTCGCTTTGGTTATTTTAACCGTTGGTCTAGTTGGCGT CTTTAACCTTCATATCATTTCTAAACGTGGTAGTTTCGAGTCTTTTCAGCAGACTCAGGCCTCTTATTATGCTAACGATA TTATTAACCGTATGAGGCTTAATCCTGGGCAGTTAGCAGGTTATGTTGGTAATTTTAGTGGTACGCCACCAATTCCTACC CCCGCCTGTACAGGGGCTGCACTATGTTCTCCTGCGCAGACTGTGGGCTGGGATCTATATGAGTGGCGAGCAGCATTTAT CGGGCAAGCAGAAACTGTCGGGGCTCAAAATGTTGGAGGGTTGGATACAGCCACTGGGTGTATAGCTATTAACGGCAATA CAGTCACTGTCATCATGTCGTGGCAGGGAATAAGGTCTACATCAGATTCTGCAAACTTTCCCGATTGCGGAAGTTCAAGT GATCGCCGACGAGTTTACTCCATTCAAACGGTGATTATTTAA
Upstream 100 bases:
>100_bases TAACGTGTATGCTGTTTTAACACTTATAAGTAACCGATTTAAAACGGTAAAATCAAAATATTAACGTCAATAATATGACG AATGCAAGAGGATTGACGGA
Downstream 100 bases:
>100_bases ATGAAACACTTCGCTAAAAATAGCCCCTCTATACAGTATGGCATGTCACTCGTTGAGTTGATGGTTGCCATGGTGATCAG CCTGTTTTTGTCTGCCGGTA
Product: type IV pilus modification protein PilV
Products: NA
Alternate protein names: Type 4 Fimbrial Biogenesis Related Transmembrane Protein; Type IV Pilus Biogenesis Protein; Type IV Pilus Assembly Protein PilV; Type IV Fimbrial Biogenesis Protein PilV; Methylation; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues METREKGLSLIEVLVALVILTVGLVGVFNLHIISKRGSFESFQQTQASYYANDIINRMRLNPGQLAGYVGNFSGTPPIPT PACTGAALCSPAQTVGWDLYEWRAAFIGQAETVGAQNVGGLDTATGCIAINGNTVTVIMSWQGIRSTSDSANFPDCGSSS DRRRVYSIQTVII
Sequences:
>Translated_173_residues METREKGLSLIEVLVALVILTVGLVGVFNLHIISKRGSFESFQQTQASYYANDIINRMRLNPGQLAGYVGNFSGTPPIPT PACTGAALCSPAQTVGWDLYEWRAAFIGQAETVGAQNVGGLDTATGCIAINGNTVTVIMSWQGIRSTSDSANFPDCGSSS DRRRVYSIQTVII >Mature_173_residues METREKGLSLIEVLVALVILTVGLVGVFNLHIISKRGSFESFQQTQASYYANDIINRMRLNPGQLAGYVGNFSGTPPIPT PACTGAALCSPAQTVGWDLYEWRAAFIGQAETVGAQNVGGLDTATGCIAINGNTVTVIMSWQGIRSTSDSANFPDCGSSS DRRRVYSIQTVII
Specific function: Unknown
COG id: COG4967
COG function: function code NU; Tfp pilus assembly protein PilV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18464; Mature: 18464
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METREKGLSLIEVLVALVILTVGLVGVFNLHIISKRGSFESFQQTQASYYANDIINRMRL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCC NPGQLAGYVGNFSGTPPIPTPACTGAALCSPAQTVGWDLYEWRAAFIGQAETVGAQNVGG CHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCHHHHHHHHHHCCHHHCCCCCCCC LDTATGCIAINGNTVTVIMSWQGIRSTSDSANFPDCGSSSDRRRVYSIQTVII CCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure METREKGLSLIEVLVALVILTVGLVGVFNLHIISKRGSFESFQQTQASYYANDIINRMRL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCC NPGQLAGYVGNFSGTPPIPTPACTGAALCSPAQTVGWDLYEWRAAFIGQAETVGAQNVGG CHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCHHHHHHHHHHCCHHHCCCCCCCC LDTATGCIAINGNTVTVIMSWQGIRSTSDSANFPDCGSSSDRRRVYSIQTVII CCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA