The gene/protein map for NC_010334 is currently unavailable.
Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167623058

Identifier: 167623058

GI number: 167623058

Start: 1364332

End: 1366698

Strand: Reverse

Name: 167623058

Synonym: Shal_1124

Alternate gene names: NA

Gene position: 1366698-1364332 (Counterclockwise)

Preceding gene: 167623062

Following gene: 167623057

Centisome position: 26.15

GC content: 45.5

Gene sequence:

>2367_bases
ATGGCACATCAGCAAGAAATTGTCGCACTTAAGAAATTTGTTCGAGCAACTAACTTTCTGGCGACATCACAAATTTATTT
AAAGAAAAACGTGCTGCATAAACGCGCACTTGAACACTCCGATATTAAGCCTAGGCTACTTGGTCACTGGGGAACGTGCC
CAGGTATCAATTTTGTCTACGCTAACGTTAACAGGCTCATCACCAAGCACAACCGCTCATTCGTTTATTTAGTTGGCCCC
GGCCATGGCTTTCCAGCTGTTCAAGCAAACTTGTTTATGGAAGGCTCCTTAAGCCACTTCTACCCCGATACCATTCCATA
TAATGAAGACGGGATCACCGATATCTGCCAGAAGTTCTCTGCCGCTTATGGTTACCCTTCGCATGCGAACCCTGAAGCGC
CAGGCCAAATCCTTGAAGGTGGTGAACTAGGCTATTCACTTTCTGTTGCTTGGGGCGCTGTTTTAGATAATCCAGATCTG
ATTGCCGCTTGCCTTATCGGTGACGGTGAGTCAGAAACCGGCCCACTAGCTGCCTCTTGGTATGCGAACCGTTTAGTGTC
TGCAAAGAATAATGGTGCTGTTTTACCTATTGTTCATATCAACGGTTATAAGATTTCGGGTCCGACTCGTATGGGTCGTA
TGAGCCATGAAGAACTCGATCTTGAATTTAGAGGTCTAGGTTACCATCCCATTATTGTTGATGATCAATTAGAAGAAGAC
GTTTATCTTCAGATGGCTGCCGCAATGGATAAGTCATACGAAATGATCAATGACATCCAAACCCGCGCTCGTGCAGGTGA
AGATATCGTTAAGCCACGCTGGCCAGTGATCTTAATGCGTACCGCTAAAGGCTGGACGGGTACTGCCGAGTTTGATGGTA
AGAAATTAGAAGGTAACTGTGAATCCCACCAGGTTATCGTCAACAAATGTGCTAGCAACAAAGGTCACCTCGATGCACTA
AATACTTGGCTTGCGAGCTACAAGTTTAATGAGCTTTATAGTATCAATGAAAAAGGCGAGCTGATCTTCGACGAAGATAT
TCAGTCCCTTCTACCACCAAAAGAACTAACCTGTGGTCGCCAGCATTTAAGTTATGGTGGTGAAGTGGTTCGCGCACTCG
CTAAACCTGATCTAGAAAAGCTTGCCTATGGTCCTGAAACCCCTCGCGGCCATCGCGGCTTATCTATGTATAAGATGGGC
GAATGGATGCGTGATGCATTTAAGCTTAACCGCGATCAGCGTAACTTACGTATTTTCTGTCCAGATGAAACCTATTCAAA
TCAACTACAAGCCGTATTTGAAGAGACGAGCCGTGCATGGCAGTGGCCTATCGAAAGCTGGGATGAAGATATGTCTCGTG
ACGGTCGAGTCATCGAGTTGCTATCAGAAAACCTATTATTCGGTATGTTACACGGCTACACAGTAACGGGTCGCCATGCC
ATGTTCCCAACTTATGAGGCGTTCTCACAAGTTGTTTCTTCAATGGCCGACCAATACTGTAAATATGTATATGCGAGCCA
AGGCGTACATTTCCGTAAGCCTGTTCCTGCTTGTAACGTAGTTTTATCCTCACTACTTGAGCGCCAAGATCACAACGGTT
ATTCACATCAAAACCCCTCTTTCTTGGGTGCGATGCTTGAGAAACACCCGAAGATTATCTCAGCTTACCTTCCTGCAGAT
GGTAACAGCACCTTAGTTTATACTGAGCGCGCTTATGCCGATCGCGACAAGCTCAACATCTTAGTGGCGGGTAAGAAAGA
TCTACCACAGTGGCTAACACTCGATGAGGCTCGTCAACAAGCAAAAGATGGTGTCATGGTTTGGGATTTCGCATCAGATG
AAAACCCAGATGTGGTACTTGTCGGTTGTGGTGATTATGTCACTCAAGAGGCGATGGCTGCACTGGTGCTTATTCGTGAG
CTGCTACCACGTGTACGCATTCGCTTTGTCAGTGTTACAGAACTCACAAGTAGTGGTTTAGGTAGCTTAGAGTTCCAAGC
TAAGCCTTGGTTGATGGATGAAGTATTCACGGCAGATAAAGGTGTAGTATTCAATTATCACGGTTATCCAAACACGATTA
AGAAACTAGTGTTTGATTATAAAGGTAGCAAGCGCTTCAGAATTAAAGGCTATGAAGAGGAAGGCTCAACAACAACTCCA
TTTGATATGGGCGTTCGTAATGGCACATCACGTTACCATCTAGTCATTGATATGGCATACAAGCTCTTCCAGAGCAGCGT
GATTGACGAGTCTCAACACGTGGCTATCACCACCGACATGCTGCAACGCTTAGTCGACCATAGAAATTACATCAAGGCCA
ACGGTGTTGATCCTGAAAGCATCGAAAACTGGGTTTGGACACGTTAA

Upstream 100 bases:

>100_bases
CAATAAATCAGATATTGCACACGTTTTTGTAATAAAATTACAAATATAGTGAGTTATATAAAATTTGTTTAACTTTATGA
TTACGTAAATGGGGTTATTT

Downstream 100 bases:

>100_bases
CTCTTTATCTATTTTGAGTTGTAATTTTCAATCAATCAAAGGGCGCTTTTAAAGCGCCCTTTTTTTATGCAACTTTAGTT
CTCTATGATATTTCACAATT

Product: putative phosphoketolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 787

Protein sequence:

>788_residues
MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLITKHNRSFVYLVGP
GHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDL
IAACLIGDGESETGPLAASWYANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED
VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNCESHQVIVNKCASNKGHLDAL
NTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGRQHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMG
EWMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA
MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD
GNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQAKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRE
LLPRVRIRFVSVTELTSSGLGSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP
FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR

Sequences:

>Translated_788_residues
MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLITKHNRSFVYLVGP
GHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDL
IAACLIGDGESETGPLAASWYANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED
VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNCESHQVIVNKCASNKGHLDAL
NTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGRQHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMG
EWMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA
MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD
GNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQAKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRE
LLPRVRIRFVSVTELTSSGLGSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP
FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR
>Mature_787_residues
AHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVYANVNRLITKHNRSFVYLVGPG
HGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFSAAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLI
AACLIGDGESETGPLAASWYANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEEDV
YLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNCESHQVIVNKCASNKGHLDALN
TWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGRQHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMGE
WMRDAFKLNRDQRNLRIFCPDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHAM
FPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPADG
NSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQAKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIREL
LPRVRIRFVSVTELTSSGLGSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTPF
DMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPESIENWVWTR

Specific function: Unknown

COG id: COG3957

COG function: function code G; Phosphoketolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the XFP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009014
- InterPro:   IPR005593
- InterPro:   IPR018969
- InterPro:   IPR019790
- InterPro:   IPR018970
- InterPro:   IPR019789 [H]

Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]

EC number: NA

Molecular weight: Translated: 88907; Mature: 88776

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEE
ANVNRLITKHNRSFVYLVGPGHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFS
ECHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH
AAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLIAACLIGDGESETGPLAASW
HHCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEHHH
YANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED
HHHHHHCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCCEEECCCCCHH
VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNC
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ESHQVIVNKCASNKGHLDALNTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGR
CHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECCCHHHHCCCHHHCCCH
QHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMGEWMRDAFKLNRDQRNLRIFC
HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
PDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA
CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCC
MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH
FLGAMLEKHPKIISAYLPADGNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQ
HHHHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
AKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRELLPRVRIRFVSVTELTSSGL
HHCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHCCCC
GSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP
CCEEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPES
HHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEECCCCHHH
IENWVWTR
HHHCCCCC
>Mature Secondary Structure 
AHQQEIVALKKFVRATNFLATSQIYLKKNVLHKRALEHSDIKPRLLGHWGTCPGINFVY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEE
ANVNRLITKHNRSFVYLVGPGHGFPAVQANLFMEGSLSHFYPDTIPYNEDGITDICQKFS
ECHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH
AAYGYPSHANPEAPGQILEGGELGYSLSVAWGAVLDNPDLIAACLIGDGESETGPLAASW
HHCCCCCCCCCCCCCHHCCCCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEHHH
YANRLVSAKNNGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYHPIIVDDQLEED
HHHHHHCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCCCCCEEECCCCCHH
VYLQMAAAMDKSYEMINDIQTRARAGEDIVKPRWPVILMRTAKGWTGTAEFDGKKLEGNC
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ESHQVIVNKCASNKGHLDALNTWLASYKFNELYSINEKGELIFDEDIQSLLPPKELTCGR
CHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECCCHHHHCCCHHHCCCH
QHLSYGGEVVRALAKPDLEKLAYGPETPRGHRGLSMYKMGEWMRDAFKLNRDQRNLRIFC
HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
PDETYSNQLQAVFEETSRAWQWPIESWDEDMSRDGRVIELLSENLLFGMLHGYTVTGRHA
CCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCC
MFPTYEAFSQVVSSMADQYCKYVYASQGVHFRKPVPACNVVLSSLLERQDHNGYSHQNPS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH
FLGAMLEKHPKIISAYLPADGNSTLVYTERAYADRDKLNILVAGKKDLPQWLTLDEARQQ
HHHHHHHHCCCEEEEEECCCCCCEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
AKDGVMVWDFASDENPDVVLVGCGDYVTQEAMAALVLIRELLPRVRIRFVSVTELTSSGL
HHCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHCCCC
GSLEFQAKPWLMDEVFTADKGVVFNYHGYPNTIKKLVFDYKGSKRFRIKGYEEEGSTTTP
CCEEECCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
FDMGVRNGTSRYHLVIDMAYKLFQSSVIDESQHVAITTDMLQRLVDHRNYIKANGVDPES
HHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCEEEECCCCHHH
IENWVWTR
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]