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The map label for this gene is oprF [H]

Identifier: 167623057

GI number: 167623057

Start: 1362993

End: 1364090

Strand: Reverse

Name: oprF [H]

Synonym: Shal_1123

Alternate gene names: 167623057

Gene position: 1364090-1362993 (Counterclockwise)

Preceding gene: 167623058

Following gene: 167623056

Centisome position: 26.1

GC content: 44.99

Gene sequence:

>1098_bases
ATGATGAACAACACACTAAAAGCAGTTCTGCTTACTTCGATGTTACCTTTTGCTGCTAGCGCGGCTGACGGTATGAGCCC
CTGGTATGTAGGTGGTGGGGTCGGCATCAACAACTACGAACCTAATTGCGATCAAAAAACCATGAAAAGCTGTGGTAAAG
ACGATCCCTATGCATGGGATGTATTCGCAGGTTACCTGTTTAATGATTATTTCGGCGCAGAGCTAGGCTATCGAGACCTA
GGGCGAGCAGAATGGGTCGACTATTCAAACAAGCTCAATGATGTGGGAGCTAAAGGCATGAACCTTGGTCTAGTGGCTTT
TTGGCCCTTTGCAGGTAATTGGAGCCTGTCAGCTGAAGCCGGTGCTTTCAACTATCTCATTTCAAATAACAAGAACTATG
GCAGTGAATACTACAGCGACAGCGGTGTGGCTCCTTACTTTGGCGCGGGTATCGGTTATAACATTACTGATAACTTAAAA
ATTCAGGCTAAATACCGTCGTTATGAAAACCTAGACGAGGACAAGTGGAAAACCCTTGAGATGGAAAGTAACTATTGGGG
TCTTGAGCTAAGCTATCGTTTTGGTAATAAGGCTAAGCCTGTTCCGGTCGTCGCCGCAATCATAGTTGTAGACTCTGATA
ACGACGGCGTGACAGATGACTTAGATCAGTGCCCGAATACACCAACTACCTATAAGGTTGATGCATACGGCTGTCCGATT
TTCTTAGAAGTAGAGAGCCAGCTTGATATTGAAGCAAAATTTGCTAACAACTCAGCTGAAGTAGAAAAGTCTTCATATGG
TGCCATTCGGGAGCTTGCTACATATATGAAGCAGCACCCTAATGCAGAAGTAACCATTTCTGGTTTCGCCTCTAATACGG
GTAAAGCTGATTATAATATGGATCTCTCTGAGCGACGTGCAGCATCTGTTGCCGAAATTCTCATCAATGAATATGATATA
GCGCCGGGCAGAGTGTCCTCAAAAGGTTACGGTATAACAAGGCCGCTAATGGAAGGAAGTTCCGCAGAAGCTAACGCCGT
AAACCGACGTATCGAAGCCCATGTAACAGATCTATCTGTCACTCCAGTGCTTAAATAA

Upstream 100 bases:

>100_bases
CTAGCTAAAACATAAAGGAACTCCGTGATAAGTGCTAGTACTGCTTAGAATAATAGTAAGCAGGCGGAGACGTTTTATAA
ATAAAACATAAGGACTATAA

Downstream 100 bases:

>100_bases
AATTATGCTCTTTACCAAAAGCTCACGGCTATCACAACCGTGGGCTTTTTTAATATGATGGGTTTATAAAAACGCTATAC
TTCTTGATCAAACTTTTAAC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MMNNTLKAVLLTSMLPFAASAADGMSPWYVGGGVGINNYEPNCDQKTMKSCGKDDPYAWDVFAGYLFNDYFGAELGYRDL
GRAEWVDYSNKLNDVGAKGMNLGLVAFWPFAGNWSLSAEAGAFNYLISNNKNYGSEYYSDSGVAPYFGAGIGYNITDNLK
IQAKYRRYENLDEDKWKTLEMESNYWGLELSYRFGNKAKPVPVVAAIIVVDSDNDGVTDDLDQCPNTPTTYKVDAYGCPI
FLEVESQLDIEAKFANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNTGKADYNMDLSERRAASVAEILINEYDI
APGRVSSKGYGITRPLMEGSSAEANAVNRRIEAHVTDLSVTPVLK

Sequences:

>Translated_365_residues
MMNNTLKAVLLTSMLPFAASAADGMSPWYVGGGVGINNYEPNCDQKTMKSCGKDDPYAWDVFAGYLFNDYFGAELGYRDL
GRAEWVDYSNKLNDVGAKGMNLGLVAFWPFAGNWSLSAEAGAFNYLISNNKNYGSEYYSDSGVAPYFGAGIGYNITDNLK
IQAKYRRYENLDEDKWKTLEMESNYWGLELSYRFGNKAKPVPVVAAIIVVDSDNDGVTDDLDQCPNTPTTYKVDAYGCPI
FLEVESQLDIEAKFANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNTGKADYNMDLSERRAASVAEILINEYDI
APGRVSSKGYGITRPLMEGSSAEANAVNRRIEAHVTDLSVTPVLK
>Mature_365_residues
MMNNTLKAVLLTSMLPFAASAADGMSPWYVGGGVGINNYEPNCDQKTMKSCGKDDPYAWDVFAGYLFNDYFGAELGYRDL
GRAEWVDYSNKLNDVGAKGMNLGLVAFWPFAGNWSLSAEAGAFNYLISNNKNYGSEYYSDSGVAPYFGAGIGYNITDNLK
IQAKYRRYENLDEDKWKTLEMESNYWGLELSYRFGNKAKPVPVVAAIIVVDSDNDGVTDDLDQCPNTPTTYKVDAYGCPI
FLEVESQLDIEAKFANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNTGKADYNMDLSERRAASVAEILINEYDI
APGRVSSKGYGITRPLMEGSSAEANAVNRRIEAHVTDLSVTPVLK

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=357, Percent_Identity=23.249299719888, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 40163; Mature: 40163

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNNTLKAVLLTSMLPFAASAADGMSPWYVGGGVGINNYEPNCDQKTMKSCGKDDPYAWD
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEHH
VFAGYLFNDYFGAELGYRDLGRAEWVDYSNKLNDVGAKGMNLGLVAFWPFAGNWSLSAEA
HHHHHHHHHHHCCCCCHHHCCCHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCC
GAFNYLISNNKNYGSEYYSDSGVAPYFGAGIGYNITDNLKIQAKYRRYENLDEDKWKTLE
CEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCEEEE
MESNYWGLELSYRFGNKAKPVPVVAAIIVVDSDNDGVTDDLDQCPNTPTTYKVDAYGCPI
ECCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCEE
FLEVESQLDIEAKFANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNTGKADYNM
EEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
DLSERRAASVAEILINEYDIAPGRVSSKGYGITRPLMEGSSAEANAVNRRIEAHVTDLSV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHEEEEEEEEEEE
TPVLK
CCCCC
>Mature Secondary Structure
MMNNTLKAVLLTSMLPFAASAADGMSPWYVGGGVGINNYEPNCDQKTMKSCGKDDPYAWD
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEHH
VFAGYLFNDYFGAELGYRDLGRAEWVDYSNKLNDVGAKGMNLGLVAFWPFAGNWSLSAEA
HHHHHHHHHHHCCCCCHHHCCCHHHHCHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCC
GAFNYLISNNKNYGSEYYSDSGVAPYFGAGIGYNITDNLKIQAKYRRYENLDEDKWKTLE
CEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCEEEE
MESNYWGLELSYRFGNKAKPVPVVAAIIVVDSDNDGVTDDLDQCPNTPTTYKVDAYGCPI
ECCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCEE
FLEVESQLDIEAKFANNSAEVEKSSYGAIRELATYMKQHPNAEVTISGFASNTGKADYNM
EEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
DLSERRAASVAEILINEYDIAPGRVSSKGYGITRPLMEGSSAEANAVNRRIEAHVTDLSV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHEEEEEEEEEEE
TPVLK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]