| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is thrB [H]
Identifier: 167623049
GI number: 167623049
Start: 1355134
End: 1356069
Strand: Direct
Name: thrB [H]
Synonym: Shal_1115
Alternate gene names: 167623049
Gene position: 1355134-1356069 (Clockwise)
Preceding gene: 167623048
Following gene: 167623050
Centisome position: 25.93
GC content: 46.79
Gene sequence:
>936_bases ATGAGTGTAACCATTTATGCCCCAGCATCGATGGGCAACGTAGGCGTGGGTTTTGACCTACTGGGGGCGGCGTTAGCCCC TATTGATGGCAGTTTGCTTGGCGATAGGGTTAAGGTTGAATCTGCTGAGCAGGGACTTTCACTCATTCTTGAAGGCCATT GGGCAAGTAAGTTACCGCAAAATGAGCAAGAGAATATTGTCTATCAATGTGCAGCGTTTTTCCTCTGCCATCTAGGTAAA GACACAGGGCTTAAATTAACGTTAGAGAAGAACTTGCCTGTAGGCAGCGGACTTGGCTCGAGTGCCAGCTCGGTTGTAGC CGCGCTAATGGCATTAAATGAATTTTTTGAGCAGCCATTTAACGAGCAAGAACTGCTGCGCTTAATGGGGGAGTTCGAAG GCAAGATCAGTGGCTCAATACATTATGATAATGTTGCCCCTTGTTACTTAGGCGGAATGCAATTGATGCTCGATACGCCT AAGACTGTTTGTGAAGCGATCCCTGAGTTTAAGCAATGGTATTGGGTGGTGGCTTACCCTGGTATTTCGCTATCAACCTC AAGAATGCGCCAATTGATGCCCAATGAATTCGATAAGCAGACGACGATCGATTTTGGTCGCTACTTAAGTGCCTTTGTAC ACGCATCCTATAAGCAAGATGCAGATCTAGCTATTTCGGTATTAAAGGATGTGTTGGCCGAGCCATATCGCGCGCCTGAA ATCCCTAATTATCAAAATGCTAAAACGGCTTTAGCCGAGTTAGGTATGTTCACGACAGGGATTTCAGGTAGTGGTCCGAC CCTGTTTAGCATTACCGATGATCTTGATGTGGCTAAGCAAGCACAGCAATGGCTGGACGCGAACTATGTTGAGCCTAGTA AAGGCTTCTCTCATATCTGCAGAATCGATAGCCAAGGGGCTCGTAGAGTCGACTAA
Upstream 100 bases:
>100_bases CATTTGTACTTCGAGGATATGGTGCGGGTACCGATGTTACTGCTGCGGGCGCATTTGCCGATATTTTACGTACACTAAAT TGGACTCGTGAGGTGGGGGT
Downstream 100 bases:
>100_bases GCGTCTTAACTAGACCCAATGAACAGAATTTTAAGGAAGTCATTATGGAGTTATATAACCTAAAGCACCCGTCACAGGTG GTGAGCTTTACTGAAGCGGT
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK [H]
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MSVTIYAPASMGNVGVGFDLLGAALAPIDGSLLGDRVKVESAEQGLSLILEGHWASKLPQNEQENIVYQCAAFFLCHLGK DTGLKLTLEKNLPVGSGLGSSASSVVAALMALNEFFEQPFNEQELLRLMGEFEGKISGSIHYDNVAPCYLGGMQLMLDTP KTVCEAIPEFKQWYWVVAYPGISLSTSRMRQLMPNEFDKQTTIDFGRYLSAFVHASYKQDADLAISVLKDVLAEPYRAPE IPNYQNAKTALAELGMFTTGISGSGPTLFSITDDLDVAKQAQQWLDANYVEPSKGFSHICRIDSQGARRVD
Sequences:
>Translated_311_residues MSVTIYAPASMGNVGVGFDLLGAALAPIDGSLLGDRVKVESAEQGLSLILEGHWASKLPQNEQENIVYQCAAFFLCHLGK DTGLKLTLEKNLPVGSGLGSSASSVVAALMALNEFFEQPFNEQELLRLMGEFEGKISGSIHYDNVAPCYLGGMQLMLDTP KTVCEAIPEFKQWYWVVAYPGISLSTSRMRQLMPNEFDKQTTIDFGRYLSAFVHASYKQDADLAISVLKDVLAEPYRAPE IPNYQNAKTALAELGMFTTGISGSGPTLFSITDDLDVAKQAQQWLDANYVEPSKGFSHICRIDSQGARRVD >Mature_310_residues SVTIYAPASMGNVGVGFDLLGAALAPIDGSLLGDRVKVESAEQGLSLILEGHWASKLPQNEQENIVYQCAAFFLCHLGKD TGLKLTLEKNLPVGSGLGSSASSVVAALMALNEFFEQPFNEQELLRLMGEFEGKISGSIHYDNVAPCYLGGMQLMLDTPK TVCEAIPEFKQWYWVVAYPGISLSTSRMRQLMPNEFDKQTTIDFGRYLSAFVHASYKQDADLAISVLKDVLAEPYRAPEI PNYQNAKTALAELGMFTTGISGSGPTLFSITDDLDVAKQAQQWLDANYVEPSKGFSHICRIDSQGARRVD
Specific function: Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate [H]
COG id: COG0083
COG function: function code E; Homoserine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GHMP kinase family. Homoserine kinase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786184, Length=306, Percent_Identity=53.5947712418301, Blast_Score=352, Evalue=1e-98, Organism=Saccharomyces cerevisiae, GI6321814, Length=321, Percent_Identity=24.6105919003115, Blast_Score=73, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006204 - InterPro: IPR013750 - InterPro: IPR006203 - InterPro: IPR000870 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]
EC number: =2.7.1.39 [H]
Molecular weight: Translated: 33950; Mature: 33819
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS00627 GHMP_KINASES_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTIYAPASMGNVGVGFDLLGAALAPIDGSLLGDRVKVESAEQGLSLILEGHWASKLPQ CEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCHHCCCEEEEECCHHHCCCC NEQENIVYQCAAFFLCHLGKDTGLKLTLEKNLPVGSGLGSSASSVVAALMALNEFFEQPF CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC NEQELLRLMGEFEGKISGSIHYDNVAPCYLGGMQLMLDTPKTVCEAIPEFKQWYWVVAYP CHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCEEECCHHHHHHHHHHHHHEEEEEEEC GISLSTSRMRQLMPNEFDKQTTIDFGRYLSAFVHASYKQDADLAISVLKDVLAEPYRAPE CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC IPNYQNAKTALAELGMFTTGISGSGPTLFSITDDLDVAKQAQQWLDANYVEPSKGFSHIC CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHH RIDSQGARRVD HCCCCCCCCCC >Mature Secondary Structure SVTIYAPASMGNVGVGFDLLGAALAPIDGSLLGDRVKVESAEQGLSLILEGHWASKLPQ EEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCHHCCCEEEEECCHHHCCCC NEQENIVYQCAAFFLCHLGKDTGLKLTLEKNLPVGSGLGSSASSVVAALMALNEFFEQPF CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC NEQELLRLMGEFEGKISGSIHYDNVAPCYLGGMQLMLDTPKTVCEAIPEFKQWYWVVAYP CHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCEEECCHHHHHHHHHHHHHEEEEEEEC GISLSTSRMRQLMPNEFDKQTTIDFGRYLSAFVHASYKQDADLAISVLKDVLAEPYRAPE CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC IPNYQNAKTALAELGMFTTGISGSGPTLFSITDDLDVAKQAQQWLDANYVEPSKGFSHIC CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHH RIDSQGARRVD HCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]