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The map label for this gene is raiA [H]

Identifier: 167623042

GI number: 167623042

Start: 1348358

End: 1348720

Strand: Reverse

Name: raiA [H]

Synonym: Shal_1108

Alternate gene names: 167623042

Gene position: 1348720-1348358 (Counterclockwise)

Preceding gene: 167623044

Following gene: 167623041

Centisome position: 25.8

GC content: 40.22

Gene sequence:

>363_bases
ATGATAAAGATTACTAGCAAACACTTTGAAGTTACTGAATCTATCCGCGAACGCATTGAAACCAGACTTGATAAATTAGC
AAGACACGATGTGCAGCTAATTAATCCACACATTATTATTGAGCAGGAGAAGCAAGGTTTTAAAATTGAAGCTTCTGTAG
GCATTCCAAATGCCAAGTTATTTGCCCAGGCGAAACACGACGACCTCTATGCAGCAATTAATGCAATGGGACAAAAGCTG
GAAAAACAGCTAAACCGCCTGACTCATAAACCTGAAAGTCAACGTCACGCAACACTTAAAGTAGAAGATGATGCCATTGA
TGACGACTTTGATGACAACTTAGAGGAGGAATACGCAGCTTGA

Upstream 100 bases:

>100_bases
GCGAACAGTTTCAAATAGCCCACAAAACGTGATTTAGATCACGACTTTCCTATCTAATATTGGTAGTCTGAATACATGGA
AACAACAAAAGGTTCGACAT

Downstream 100 bases:

>100_bases
TATTATTGTTAAATTTACACGCAAAGCGCATCTTCGGGTGCGCTTTTTAATGCAAAAATTTCAAATAAGCTAAGTTTTGA
TTGACACTCAAGCCGCCCCG

Product: sigma 54 modulation protein/30S ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MIKITSKHFEVTESIRERIETRLDKLARHDVQLINPHIIIEQEKQGFKIEASVGIPNAKLFAQAKHDDLYAAINAMGQKL
EKQLNRLTHKPESQRHATLKVEDDAIDDDFDDNLEEEYAA

Sequences:

>Translated_120_residues
MIKITSKHFEVTESIRERIETRLDKLARHDVQLINPHIIIEQEKQGFKIEASVGIPNAKLFAQAKHDDLYAAINAMGQKL
EKQLNRLTHKPESQRHATLKVEDDAIDDDFDDNLEEEYAA
>Mature_120_residues
MIKITSKHFEVTESIRERIETRLDKLARHDVQLINPHIIIEQEKQGFKIEASVGIPNAKLFAQAKHDDLYAAINAMGQKL
EKQLNRLTHKPESQRHATLKVEDDAIDDDFDDNLEEEYAA

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=116, Percent_Identity=45.6896551724138, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13833; Mature: 13833

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKITSKHFEVTESIRERIETRLDKLARHDVQLINPHIIIEQEKQGFKIEASVGIPNAKL
CEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCEEEEEECCCCCHHH
FAQAKHDDLYAAINAMGQKLEKQLNRLTHKPESQRHATLKVEDDAIDDDFDDNLEEEYAA
EEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIKITSKHFEVTESIRERIETRLDKLARHDVQLINPHIIIEQEKQGFKIEASVGIPNAKL
CEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCEEEEEECCCCCHHH
FAQAKHDDLYAAINAMGQKLEKQLNRLTHKPESQRHATLKVEDDAIDDDFDDNLEEEYAA
EEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]