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The map label for this gene is 167623044

Identifier: 167623044

GI number: 167623044

Start: 1349787

End: 1350248

Strand: Reverse

Name: 167623044

Synonym: Shal_1110

Alternate gene names: NA

Gene position: 1350248-1349787 (Counterclockwise)

Preceding gene: 167623046

Following gene: 167623042

Centisome position: 25.83

GC content: 41.13

Gene sequence:

>462_bases
ATGAAAATAACAGCAAAGATGAGCCTTATCGCGCTAACAGCAACTGCGACCCTAGCCACTAGTGTATATGCAAATAACTT
TAAAGAAGCCGATGACGCAATCGATTACCGCCAATCTGCATTTAGCATGATTGCTCATAACTTTGGTGATATGGGGGCAA
TGCTTAAAGGAAAAAAAGAATTCAACGCTGAAATTTTTGCTATGCGAGCAGAAAATGTAGCCGCCTTATCAAAGCTTCCA
GTTGAAGGCTTTGTTGCAGGTTCTGATAAAGGTGACACCGAAGCGCTAGCTAAAATTTGGAGTGATAAAGCTGACTTCGA
TGCCAAAATGAAGACCTTTCAAGAGAATGCTGCGATACTCGCTTTGGCAGCAAAAAGTGGTGATAAGAAAGAGATGAAGA
AAGCCTTTGGTAACACAGGCAAGAGTTGTAAAAGCTGCCACGATGCTTATAAAAAAGACTAA

Upstream 100 bases:

>100_bases
AAGAGTAACTATTGTGAAAAACGATTGCAGTCGGTAAGGTAAAAATATATACAATAGGCAAACACAGTTCACATAACACA
ATAAAAACGTGAGAATAACC

Downstream 100 bases:

>100_bases
TATTTTGATTAGTTAAATCAGATTAAGCCTGTCATCAGACAGGCTTAATTTTATCTTCGATAAACTACAGCATGTCGATA
ACTGGTAGCATCAAGTAATT

Product: cytochrome c class II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKITAKMSLIALTATATLATSVYANNFKEADDAIDYRQSAFSMIAHNFGDMGAMLKGKKEFNAEIFAMRAENVAALSKLP
VEGFVAGSDKGDTEALAKIWSDKADFDAKMKTFQENAAILALAAKSGDKKEMKKAFGNTGKSCKSCHDAYKKD

Sequences:

>Translated_153_residues
MKITAKMSLIALTATATLATSVYANNFKEADDAIDYRQSAFSMIAHNFGDMGAMLKGKKEFNAEIFAMRAENVAALSKLP
VEGFVAGSDKGDTEALAKIWSDKADFDAKMKTFQENAAILALAAKSGDKKEMKKAFGNTGKSCKSCHDAYKKD
>Mature_153_residues
MKITAKMSLIALTATATLATSVYANNFKEADDAIDYRQSAFSMIAHNFGDMGAMLKGKKEFNAEIFAMRAENVAALSKLP
VEGFVAGSDKGDTEALAKIWSDKADFDAKMKTFQENAAILALAAKSGDKKEMKKAFGNTGKSCKSCHDAYKKD

Specific function: Cytochrome c' is the most widely occurring bacterial c- type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127
- InterPro:   IPR015984 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 16509; Mature: 16509

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITAKMSLIALTATATLATSVYANNFKEADDAIDYRQSAFSMIAHNFGDMGAMLKGKKE
CCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHH
FNAEIFAMRAENVAALSKLPVEGFVAGSDKGDTEALAKIWSDKADFDAKMKTFQENAAIL
CCCEEEEEEHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEE
ALAAKSGDKKEMKKAFGNTGKSCKSCHDAYKKD
EEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKITAKMSLIALTATATLATSVYANNFKEADDAIDYRQSAFSMIAHNFGDMGAMLKGKKE
CCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHH
FNAEIFAMRAENVAALSKLPVEGFVAGSDKGDTEALAKIWSDKADFDAKMKTFQENAAIL
CCCEEEEEEHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEE
ALAAKSGDKKEMKKAFGNTGKSCKSCHDAYKKD
EEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4360249; 11060017; 11300792 [H]