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The map label for this gene is yfjD [H]

Identifier: 167623028

GI number: 167623028

Start: 1332293

End: 1333573

Strand: Reverse

Name: yfjD [H]

Synonym: Shal_1094

Alternate gene names: 167623028

Gene position: 1333573-1332293 (Counterclockwise)

Preceding gene: 167623029

Following gene: 167623023

Centisome position: 25.51

GC content: 44.5

Gene sequence:

>1281_bases
TTGGACGATATATCCACTGGCGTACTTTTATCAACTTTGTTCGTCTTGATTATACTCTCAGCCTACTTTTCAGGCTCAGA
AACCGCCATGATGTCGCTCAATCGCTACCGCCTGCGTCACTTGGCAAACAGTGGCCATAAAGGTGCTAAACGCGCCATAA
AAATGCTTGAGCGCCCTGATAGACTGATAGGGCTTATCCTTATCGGTAATAACCTGGTGAATATTCTCGCGTCGGCTATC
GCCACCATTATCGGAATTCGTTTATTTGGTGACGTCGGGGTCGCCATCTCGACCGGTGTGTTAACGCTTGTCGTACTCGT
ATTTGCTGAAGTCACTCCCAAAACCGTTGCAGCCCTCCATCCTGAACGTATCGCTTTCCCCTCTAGCTTAATCCTTCGCG
TACTATTAGTCGTATTATCGCCCTTCGTTAAAGTTGTCAATTTCATTACCTCGACCTTCTTACGCTTACTCGGTATTCGT
TCTGTTAAAGCCGATGATGCCCTAAGCCAAGAAGAACTACGTACCGTTGTGAATGAGGCTGGAGCCTTAATTCCACAACG
TCACCAAGAGATGTTGCTGTCGATTATGGATCTTGAAAAGGTGACGGTCGATGACATCATGATCCCGCGTTCTGATCTTT
ATGCCATCAATATTAACGATGACTTTAAGAGCATCAACAAGCAGGTGATCCAAAGCCCACACACCCGTGTTTTACTTTAT
CGAGATACCATCGATGACGCGGTTGGTTTTGTACATTTACGTGATGCGCTACGTCTGCAATCTAAAGGGCAATTTAGTAA
GTCATCACTACTTCGTGCAGTAAAAGAGCTGTACTTTATTCCTGAAGCGACGCCGCTAAATGTACAACTATCGAACTTTC
AGCATAATAAAGAGCGCATCGGCTTAGTGGTAGATGAGTATGGCGACATTCAAGGCTTGGTGACACTTGAAGATATTTTA
GAAGAGATTGTCGGTGACTTTACCACCTCAATGGTGACAACTCCGAGCGAAGATATCACCCTACAACAGGATGGAAGTTA
TCTGATTGAGGCCAGTATCAACATTCGAGAGCTCAATAAAGAGATGAGTTGGCAATTTCCAATCGATGGCCCTAAGACCA
TTAATGGTCTAGTACTCGAATATCTTGAAGAGATCCCAGAGCCCAATACTTCAATGCGCTTATATGGTTACCCGCTCGAA
GTTATTGATGTGGCCGATAATATGATTAAAACGGTAAGAGTCATGCCACAGCATTATCTACCACCAACAAAAGCAAAATA
G

Upstream 100 bases:

>100_bases
GACACTTATTTGAAAGTTCTGTAATTACTAATTTTATTTATAGCGCTTTATTCAGTTTTTATTCGCCTCTATCTTTAAAA
CAACAGCGGAGCTCCAAGGT

Downstream 100 bases:

>100_bases
GCTCGCAGCGTAATCTTTTAGACTTCTGCAAGAAAGACTGAAATGAAAGAAGACGCCATCAACGCCTTCTTTTTGCTGAT
TATGACTGCGATTATCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MDDISTGVLLSTLFVLIILSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPDRLIGLILIGNNLVNILASAI
ATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALHPERIAFPSSLILRVLLVVLSPFVKVVNFITSTFLRLLGIR
SVKADDALSQEELRTVVNEAGALIPQRHQEMLLSIMDLEKVTVDDIMIPRSDLYAININDDFKSINKQVIQSPHTRVLLY
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVTTPSEDITLQQDGSYLIEASINIRELNKEMSWQFPIDGPKTINGLVLEYLEEIPEPNTSMRLYGYPLE
VIDVADNMIKTVRVMPQHYLPPTKAK

Sequences:

>Translated_426_residues
MDDISTGVLLSTLFVLIILSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPDRLIGLILIGNNLVNILASAI
ATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALHPERIAFPSSLILRVLLVVLSPFVKVVNFITSTFLRLLGIR
SVKADDALSQEELRTVVNEAGALIPQRHQEMLLSIMDLEKVTVDDIMIPRSDLYAININDDFKSINKQVIQSPHTRVLLY
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVTTPSEDITLQQDGSYLIEASINIRELNKEMSWQFPIDGPKTINGLVLEYLEEIPEPNTSMRLYGYPLE
VIDVADNMIKTVRVMPQHYLPPTKAK
>Mature_426_residues
MDDISTGVLLSTLFVLIILSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPDRLIGLILIGNNLVNILASAI
ATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALHPERIAFPSSLILRVLLVVLSPFVKVVNFITSTFLRLLGIR
SVKADDALSQEELRTVVNEAGALIPQRHQEMLLSIMDLEKVTVDDIMIPRSDLYAININDDFKSINKQVIQSPHTRVLLY
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERIGLVVDEYGDIQGLVTLEDIL
EEIVGDFTTSMVTTPSEDITLQQDGSYLIEASINIRELNKEMSWQFPIDGPKTINGLVLEYLEEIPEPNTSMRLYGYPLE
VIDVADNMIKTVRVMPQHYLPPTKAK

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=365, Percent_Identity=26.027397260274, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI94681046, Length=320, Percent_Identity=23.75, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI40068055, Length=346, Percent_Identity=24.2774566473988, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI40068053, Length=346, Percent_Identity=24.2774566473988, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=58.2914572864322, Blast_Score=496, Evalue=1e-141,
Organism=Escherichia coli, GI1790664, Length=414, Percent_Identity=26.5700483091787, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI87082033, Length=274, Percent_Identity=28.1021897810219, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1786879, Length=259, Percent_Identity=25.0965250965251, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1788119, Length=239, Percent_Identity=22.5941422594142, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47492; Mature: 47492

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS50238 RHOGAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDISTGVLLSTLFVLIILSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RLIGLILIGNNLVNILASAIATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALH
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAFPSSLILRVLLVVLSPFVKVVNFITSTFLRLLGIRSVKADDALSQEELRTVVNEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
GALIPQRHQEMLLSIMDLEKVTVDDIMIPRSDLYAININDDFKSINKQVIQSPHTRVLLY
CCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERI
ECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMVTTPSEDITLQQDGSYLIEASINIRELNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCHHHHCH
EMSWQFPIDGPKTINGLVLEYLEEIPEPNTSMRLYGYPLEVIDVADNMIKTVRVMPQHYL
HCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PPTKAK
CCCCCC
>Mature Secondary Structure
MDDISTGVLLSTLFVLIILSAYFSGSETAMMSLNRYRLRHLANSGHKGAKRAIKMLERPD
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
RLIGLILIGNNLVNILASAIATIIGIRLFGDVGVAISTGVLTLVVLVFAEVTPKTVAALH
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PERIAFPSSLILRVLLVVLSPFVKVVNFITSTFLRLLGIRSVKADDALSQEELRTVVNEA
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
GALIPQRHQEMLLSIMDLEKVTVDDIMIPRSDLYAININDDFKSINKQVIQSPHTRVLLY
CCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEE
RDTIDDAVGFVHLRDALRLQSKGQFSKSSLLRAVKELYFIPEATPLNVQLSNFQHNKERI
ECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHC
GLVVDEYGDIQGLVTLEDILEEIVGDFTTSMVTTPSEDITLQQDGSYLIEASINIRELNK
CEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCHHHHCH
EMSWQFPIDGPKTINGLVLEYLEEIPEPNTSMRLYGYPLEVIDVADNMIKTVRVMPQHYL
HCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PPTKAK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]