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The map label for this gene is ypjD [H]

Identifier: 167623029

GI number: 167623029

Start: 1333722

End: 1334510

Strand: Reverse

Name: ypjD [H]

Synonym: Shal_1095

Alternate gene names: 167623029

Gene position: 1334510-1333722 (Counterclockwise)

Preceding gene: 167623041

Following gene: 167623028

Centisome position: 25.53

GC content: 45.37

Gene sequence:

>789_bases
ATGGTCATTTTTTCAGCTTCAGCCATGTTTTTTTATAGTATTGCTTTGGTTCTCGTCGCAAGTCGCCTTTTTCATGTTGA
CGGACCAAACAGAAAGTTAGTCGCTGGCGTGGCTGCGGTTGGTGTTGTGCTGCACGCTGCGGCGCTATATCAAGCCATTG
TCACCACTGATGGTCAAAACTTCAGCTTAACCAACGTGATCTCCTTGGTTAACTGGATCATTACCTTTAGCTTTACCATC
TTGTTATTCAGGCTGAAGGTGATTGTTGTTCTACCTGTCGTTTATGCTTGCTCGGTGATCTCTGTAGCGCTGCTTTGGTT
AGTGCCACCTGAATACATCATTCATTTCGAGATCCATCCAGACGTCTTGGTTCACGTTGTATTGTCGCTAATGGCTTACA
GTGCACTGATGATTGCTGCGCTTTATGCGATCCAACTGGCGATTATTCAGAACCGTCTAAAGAGTAAGAAGTTTGTTCTC
ACTTCGGCTATGCCACCACTGATGACCGTTGAAAAACAGCTGTATCACTTAGTGATTGTCGGCGTAATTTTACTCAGTTT
ATCACTCGCGACTGGCTTTATCTTCCTCGATGACATGTTTGAAGAAGGTAAAGGTCACAAGGCTGTACTCTCTATTATGG
CTTGGTGTGTGTATATCGCCATGCTAGCTCAGCAATACTGGGTTGGTTGCCGTATAAGAACGGCCGTAGCTTACACATTG
ACAGGCGGAGTGCTGCTGTCACTGGCTTACTTTGGCGCCCGTGTTGTCAAAGAGTTAATCCTCAACTAA

Upstream 100 bases:

>100_bases
GATTAAATCACGCTACTATGCAACTAGTTTGGTCTACTTTACTTACAGATTAAAAGCATGCGTTAAAGCATCAGGTTCAT
AAATAATAGGTTAATACTCA

Downstream 100 bases:

>100_bases
CGCCGCTATTTTGTTATTTAGCCCACCTTCAAATGGTGGGCTAAACTTGACACTTATTTGAAAGTTCTGTAATTACTAAT
TTTATTTATAGCGCTTTATT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVIFSASAMFFYSIALVLVASRLFHVDGPNRKLVAGVAAVGVVLHAAALYQAIVTTDGQNFSLTNVISLVNWIITFSFTI
LLFRLKVIVVLPVVYACSVISVALLWLVPPEYIIHFEIHPDVLVHVVLSLMAYSALMIAALYAIQLAIIQNRLKSKKFVL
TSAMPPLMTVEKQLYHLVIVGVILLSLSLATGFIFLDDMFEEGKGHKAVLSIMAWCVYIAMLAQQYWVGCRIRTAVAYTL
TGGVLLSLAYFGARVVKELILN

Sequences:

>Translated_262_residues
MVIFSASAMFFYSIALVLVASRLFHVDGPNRKLVAGVAAVGVVLHAAALYQAIVTTDGQNFSLTNVISLVNWIITFSFTI
LLFRLKVIVVLPVVYACSVISVALLWLVPPEYIIHFEIHPDVLVHVVLSLMAYSALMIAALYAIQLAIIQNRLKSKKFVL
TSAMPPLMTVEKQLYHLVIVGVILLSLSLATGFIFLDDMFEEGKGHKAVLSIMAWCVYIAMLAQQYWVGCRIRTAVAYTL
TGGVLLSLAYFGARVVKELILN
>Mature_262_residues
MVIFSASAMFFYSIALVLVASRLFHVDGPNRKLVAGVAAVGVVLHAAALYQAIVTTDGQNFSLTNVISLVNWIITFSFTI
LLFRLKVIVVLPVVYACSVISVALLWLVPPEYIIHFEIHPDVLVHVVLSLMAYSALMIAALYAIQLAIIQNRLKSKKFVL
TSAMPPLMTVEKQLYHLVIVGVILLSLSLATGFIFLDDMFEEGKGHKAVLSIMAWCVYIAMLAQQYWVGCRIRTAVAYTL
TGGVLLSLAYFGARVVKELILN

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=262, Percent_Identity=43.1297709923664, Blast_Score=187, Evalue=8e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28850; Mature: 28850

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]