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The map label for this gene is pdxJ [H]

Identifier: 167623020

GI number: 167623020

Start: 1324591

End: 1325328

Strand: Direct

Name: pdxJ [H]

Synonym: Shal_1086

Alternate gene names: 167623020

Gene position: 1324591-1325328 (Clockwise)

Preceding gene: 167623019

Following gene: 167623021

Centisome position: 25.34

GC content: 50.14

Gene sequence:

>738_bases
ATGGGCCGGATCTTATTGGGCGTTAACATCGATCATATTGCGACTCTGCGTCAGGCACGCGGTACAAATTATCCCGATCC
CGTTCATGCAGCAGCCGTTGCAGAGCATGCTGGCGCTGAGGGGATCACAATTCACTTGCGCGAAGACCGTCGTCATATTA
TCGACCGCGATGTCTATACGTTGGCGAAAACCTTAAAGACGCGTATGAATTTTGAGATGGCGGTGACCGAAGAGATGCTA
GATATCGCCTGTGATATTAAGCCTGCTTATGTGTGTTTAGTACCTGAGAAGCGTGAAGAGCTAACCACTGAAGGCGGTCT
GGATGTTGCGGGTCAGCAAGATAAAATTGCGGCAGCGGTAGCTAGGCTGACTCAAGAAGGTATTAAGGTGTCTTTATTTA
TTGATGCCGATAAAGCTCAAATTGATGCCGCCGTTGCGGTTGGCGCACCAGTGATTGAAATTCACACGGGCTGTTACGCC
GACGCAGAAACCGACGCCGAACAGGCGACGGAGCTGCAACGTATTACCGAGATGGCAACTTACGCTCATGGTAAAGGCCT
AGTCGTCAACGCGGGGCATGGTTTGCACTATCACAACGTAAAAGCTATTGCGGCGATACCTGAGCTGTATGAGCTTAATA
TCGGCCATGCGATTATTGCTCGTGCCGCTATCGATGGTTTAGCGACTGCCGTACGCGATATGAAGCAATTGATGTTAGAA
GGCCGTAGAGGCGAATAA

Upstream 100 bases:

>100_bases
AGATAAATTCAATAGCGTTCTGCTCCATGTACTGGCTAAACTGCCACCCTATCAGTACAATATGCTCTTTCATTTCAGCT
GATTTTGTTAAGGAATTATC

Downstream 100 bases:

>100_bases
GCTTTTACGCCATCATTACTGATAGCCGAGACATACGTTCTCGGCTTTTATTTATGCATTGTTATTTAAGCTTAGTTTTT
AAGTTTAGTTATTTAAGTTT

Product: pyridoxine 5'-phosphate synthase

Products: NA

Alternate protein names: PNP synthase [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MGRILLGVNIDHIATLRQARGTNYPDPVHAAAVAEHAGAEGITIHLREDRRHIIDRDVYTLAKTLKTRMNFEMAVTEEML
DIACDIKPAYVCLVPEKREELTTEGGLDVAGQQDKIAAAVARLTQEGIKVSLFIDADKAQIDAAVAVGAPVIEIHTGCYA
DAETDAEQATELQRITEMATYAHGKGLVVNAGHGLHYHNVKAIAAIPELYELNIGHAIIARAAIDGLATAVRDMKQLMLE
GRRGE

Sequences:

>Translated_245_residues
MGRILLGVNIDHIATLRQARGTNYPDPVHAAAVAEHAGAEGITIHLREDRRHIIDRDVYTLAKTLKTRMNFEMAVTEEML
DIACDIKPAYVCLVPEKREELTTEGGLDVAGQQDKIAAAVARLTQEGIKVSLFIDADKAQIDAAVAVGAPVIEIHTGCYA
DAETDAEQATELQRITEMATYAHGKGLVVNAGHGLHYHNVKAIAAIPELYELNIGHAIIARAAIDGLATAVRDMKQLMLE
GRRGE
>Mature_244_residues
GRILLGVNIDHIATLRQARGTNYPDPVHAAAVAEHAGAEGITIHLREDRRHIIDRDVYTLAKTLKTRMNFEMAVTEEMLD
IACDIKPAYVCLVPEKREELTTEGGLDVAGQQDKIAAAVARLTQEGIKVSLFIDADKAQIDAAVAVGAPVIEIHTGCYAD
AETDAEQATELQRITEMATYAHGKGLVVNAGHGLHYHNVKAIAAIPELYELNIGHAIIARAAIDGLATAVRDMKQLMLEG
RRGE

Specific function: Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate [H]

COG id: COG0854

COG function: function code H; Pyridoxal phosphate biosynthesis protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1788917, Length=242, Percent_Identity=72.3140495867769, Blast_Score=349, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR004569 [H]

Pfam domain/function: PF03740 PdxJ [H]

EC number: =2.6.99.2 [H]

Molecular weight: Translated: 26531; Mature: 26400

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRILLGVNIDHIATLRQARGTNYPDPVHAAAVAEHAGAEGITIHLREDRRHIIDRDVYT
CCEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
LAKTLKTRMNFEMAVTEEMLDIACDIKPAYVCLVPEKREELTTEGGLDVAGQQDKIAAAV
HHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCHHHHHHH
ARLTQEGIKVSLFIDADKAQIDAAVAVGAPVIEIHTGCYADAETDAEQATELQRITEMAT
HHHHHCCCEEEEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
YAHGKGLVVNAGHGLHYHNVKAIAAIPELYELNIGHAIIARAAIDGLATAVRDMKQLMLE
HHCCCEEEEECCCCCEECCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GRRGE
CCCCC
>Mature Secondary Structure 
GRILLGVNIDHIATLRQARGTNYPDPVHAAAVAEHAGAEGITIHLREDRRHIIDRDVYT
CEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
LAKTLKTRMNFEMAVTEEMLDIACDIKPAYVCLVPEKREELTTEGGLDVAGQQDKIAAAV
HHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCHHHHHHH
ARLTQEGIKVSLFIDADKAQIDAAVAVGAPVIEIHTGCYADAETDAEQATELQRITEMAT
HHHHHCCCEEEEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
YAHGKGLVVNAGHGLHYHNVKAIAAIPELYELNIGHAIIARAAIDGLATAVRDMKQLMLE
HHCCCEEEEECCCCCEECCCHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GRRGE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]