| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is lepA
Identifier: 167623015
GI number: 167623015
Start: 1319074
End: 1320864
Strand: Direct
Name: lepA
Synonym: Shal_1081
Alternate gene names: 167623015
Gene position: 1319074-1320864 (Clockwise)
Preceding gene: 167623014
Following gene: 167623016
Centisome position: 25.24
GC content: 44.67
Gene sequence:
>1791_bases ATGAAGCATATTAGAAACTTTTCAATTATTGCCCATATTGACCACGGCAAATCAACACTCTCAGATCGCCTTATTCAAGA ATGCGGTGGCTTAACCGATCGTGAAATGGCTGCGCAAGTTCTTGACTCAATGGATATTGAGCGTGAACGCGGCATTACGA TTAAAGCGCAAAGCGTGACTTTGGACTACCTAGCTAATGATGGTGAAACTTACCAGTTAAACTTCATTGATACGCCTGGC CACGTTGACTTCTCTTATGAAGTATCACGTTCGCTTGCCGCTTGTGAAGGTGCATTGTTGGTGGTTGACGCGGGTCAAGG CGTTGAAGCACAAACACTAGCAAACTGTTATACCGCACTTGAGATGGATATGGACGTAGTTCCTGTTCTGAACAAGATCG ATCTGCCGCAGGCTGATCCAGACCGTGTTGCTGAAGAAATTGAAGATATCGTGGGTATTGAAGCTACCGATGCGGTTCGA TGTTCAGCTAAAACGGGTGTCGGTATTAAAGACGTACTTGAAGTTATCGTTGCACAAATTCCACCACCAGAAGGTGACCC AGAAGGTCCACTTCAGGCGCTTATTATCGATTCTTGGTTCGATAGCTACTTAGGCGTCGTATCTCTAGTACGTATTAAAA ATGGTGTACTAAAGAAGGGGGACAAGTTTAAAGTGATGTCCACAGGACAGAACTACAATGCTGATCGCGTGGGTATTTTT ACGCCTAAGCAAACCGATACCACCGAGCTTAAAACCGGCGAAGTAGGCTTTGTTATCGCGGGCATTAAAGAGATCCATGG TGCTCCAGTAGGTGATACCCTGACTCACTCTAAGCACGGTGCAGAAAAAGCGCTTGCGGGCTTTAAGAAAGTTAAACCGC AAGTTTATGCAGGCTTATTCCCAATCTCTACCGACGATTATGAGAACTTCCGTGACGCACTGAACAAGCTTAGCTTGAAT GACGCTTCATTATTCTTTGAGCCTGAAACATCATCTGCACTCGGTTTTGGTTTCCGTATTGGCTTCTTGGGTCTGCTCCA CATGGAGATTATTCAAGAGCGTCTAGAGCGTGAATACAACCTAGAGCTGATTACGACTGCACCAACGGTAGTGTATGAAA TCGTTCAGACTAATGGCGAGACTATCTACGTTGATAACCCATCGGATCTGCCTGCGATTAACAATATCGCTGAGATGCGT GAGCCGATTGTTGAAACCAATATTTTGGTTCCAAAAGAATACTTAGGTAACGTTATTACCCTGTGTATTGAAAAGCGTGG TGTACAAACAAACCTCGTTTACCACGGTAACCAAGTGGCTTTGACATACGAACTGCCAATGGCTGAAGTGGTAATGGACT TCTTTGACCGTCTAAAGTCAACCAGCCGTGGTTATGCTTCTCTTGAGTATAACTTTATCCGTTTCGAGCCCGCTGACATG GTACGTTTAGATATCTTGATCAACGGTGACAGAGTCGATGCGTTAGCGATGATCATTCATAAAGGATTGATCCGCTCTAA AGGTCTAGCCCTTGTGAATAAGATGAAAGAGCTTATTCCTCGGCAGATGTTTGATATTGCGGTTCAAGCTGCAGTTGGTA GCCAGATCATCGCTCGTTCATCGATTAAGGCTATGCGTAAAGACGTAACGGCTAAATGTTACGGTGGTGACGTATCTCGT AAGAAGAAACTACTGAACAAGCAGAAAGAAGGTAAGAAGCGTATGAAGCAGGTTGGTAACGTTGAAGTGCCACAAGAGGC ATTCTTAGCGGTACTGAAGCTTAACGATTAA
Upstream 100 bases:
>100_bases CTCAGTTATCACACTATAAAAATTGGTATTAAAGCTGCGATCGGGTACAATTCTGCACTTTAAAATTTTTATCAACTTCG AGTTAAGTCATCCCAGCATA
Downstream 100 bases:
>100_bases ACTAATTCGTTAAGCATTGTTAATCTATCGCTAGACTGAGCGCCGCAATTTGCGGCGCTTTCATTACTGGCGTATAACCT TAAATGACAATGGCACTTTC
Product: GTP-binding protein LepA
Products: NA
Alternate protein names: EF-4; Ribosomal back-translocase LepA
Number of amino acids: Translated: 596; Mature: 596
Protein sequence:
>596_residues MKHIRNFSIIAHIDHGKSTLSDRLIQECGGLTDREMAAQVLDSMDIERERGITIKAQSVTLDYLANDGETYQLNFIDTPG HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTALEMDMDVVPVLNKIDLPQADPDRVAEEIEDIVGIEATDAVR CSAKTGVGIKDVLEVIVAQIPPPEGDPEGPLQALIIDSWFDSYLGVVSLVRIKNGVLKKGDKFKVMSTGQNYNADRVGIF TPKQTDTTELKTGEVGFVIAGIKEIHGAPVGDTLTHSKHGAEKALAGFKKVKPQVYAGLFPISTDDYENFRDALNKLSLN DASLFFEPETSSALGFGFRIGFLGLLHMEIIQERLEREYNLELITTAPTVVYEIVQTNGETIYVDNPSDLPAINNIAEMR EPIVETNILVPKEYLGNVITLCIEKRGVQTNLVYHGNQVALTYELPMAEVVMDFFDRLKSTSRGYASLEYNFIRFEPADM VRLDILINGDRVDALAMIIHKGLIRSKGLALVNKMKELIPRQMFDIAVQAAVGSQIIARSSIKAMRKDVTAKCYGGDVSR KKKLLNKQKEGKKRMKQVGNVEVPQEAFLAVLKLND
Sequences:
>Translated_596_residues MKHIRNFSIIAHIDHGKSTLSDRLIQECGGLTDREMAAQVLDSMDIERERGITIKAQSVTLDYLANDGETYQLNFIDTPG HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTALEMDMDVVPVLNKIDLPQADPDRVAEEIEDIVGIEATDAVR CSAKTGVGIKDVLEVIVAQIPPPEGDPEGPLQALIIDSWFDSYLGVVSLVRIKNGVLKKGDKFKVMSTGQNYNADRVGIF TPKQTDTTELKTGEVGFVIAGIKEIHGAPVGDTLTHSKHGAEKALAGFKKVKPQVYAGLFPISTDDYENFRDALNKLSLN DASLFFEPETSSALGFGFRIGFLGLLHMEIIQERLEREYNLELITTAPTVVYEIVQTNGETIYVDNPSDLPAINNIAEMR EPIVETNILVPKEYLGNVITLCIEKRGVQTNLVYHGNQVALTYELPMAEVVMDFFDRLKSTSRGYASLEYNFIRFEPADM VRLDILINGDRVDALAMIIHKGLIRSKGLALVNKMKELIPRQMFDIAVQAAVGSQIIARSSIKAMRKDVTAKCYGGDVSR KKKLLNKQKEGKKRMKQVGNVEVPQEAFLAVLKLND >Mature_596_residues MKHIRNFSIIAHIDHGKSTLSDRLIQECGGLTDREMAAQVLDSMDIERERGITIKAQSVTLDYLANDGETYQLNFIDTPG HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTALEMDMDVVPVLNKIDLPQADPDRVAEEIEDIVGIEATDAVR CSAKTGVGIKDVLEVIVAQIPPPEGDPEGPLQALIIDSWFDSYLGVVSLVRIKNGVLKKGDKFKVMSTGQNYNADRVGIF TPKQTDTTELKTGEVGFVIAGIKEIHGAPVGDTLTHSKHGAEKALAGFKKVKPQVYAGLFPISTDDYENFRDALNKLSLN DASLFFEPETSSALGFGFRIGFLGLLHMEIIQERLEREYNLELITTAPTVVYEIVQTNGETIYVDNPSDLPAINNIAEMR EPIVETNILVPKEYLGNVITLCIEKRGVQTNLVYHGNQVALTYELPMAEVVMDFFDRLKSTSRGYASLEYNFIRFEPADM VRLDILINGDRVDALAMIIHKGLIRSKGLALVNKMKELIPRQMFDIAVQAAVGSQIIARSSIKAMRKDVTAKCYGGDVSR KKKLLNKQKEGKKRMKQVGNVEVPQEAFLAVLKLND
Specific function: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- transloc
COG id: COG0481
COG function: function code M; Membrane GTPase LepA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. LepA subfamily
Homologues:
Organism=Homo sapiens, GI157426893, Length=602, Percent_Identity=47.6744186046512, Blast_Score=603, Evalue=1e-172, Organism=Homo sapiens, GI94966754, Length=134, Percent_Identity=45.5223880597015, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI25306283, Length=149, Percent_Identity=42.9530201342282, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI25306287, Length=134, Percent_Identity=45.5223880597015, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI19923640, Length=149, Percent_Identity=42.9530201342282, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI4503483, Length=144, Percent_Identity=40.2777777777778, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI18390331, Length=150, Percent_Identity=35.3333333333333, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI310132016, Length=111, Percent_Identity=43.2432432432432, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI310110807, Length=111, Percent_Identity=43.2432432432432, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI310123363, Length=111, Percent_Identity=43.2432432432432, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI53729339, Length=245, Percent_Identity=30.2040816326531, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI53729337, Length=245, Percent_Identity=30.2040816326531, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI217272894, Length=168, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=7e-16, Organism=Homo sapiens, GI217272892, Length=168, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI34147630, Length=255, Percent_Identity=28.2352941176471, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1788922, Length=594, Percent_Identity=81.1447811447811, Blast_Score=977, Evalue=0.0, Organism=Escherichia coli, GI48994988, Length=508, Percent_Identity=28.9370078740157, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1789738, Length=153, Percent_Identity=35.2941176470588, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1789559, Length=229, Percent_Identity=31.4410480349345, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790835, Length=156, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1789737, Length=334, Percent_Identity=26.6467065868263, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790412, Length=334, Percent_Identity=26.6467065868263, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17557151, Length=610, Percent_Identity=41.1475409836066, Blast_Score=486, Evalue=1e-137, Organism=Caenorhabditis elegans, GI17556745, Length=462, Percent_Identity=25.3246753246753, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17533571, Length=146, Percent_Identity=34.9315068493151, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17506493, Length=220, Percent_Identity=31.3636363636364, Blast_Score=92, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71988819, Length=135, Percent_Identity=37.7777777777778, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71988811, Length=135, Percent_Identity=37.7777777777778, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17552882, Length=145, Percent_Identity=35.1724137931034, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71994658, Length=257, Percent_Identity=26.4591439688716, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI32566303, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25141371, Length=323, Percent_Identity=25.6965944272446, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=602, Percent_Identity=45.514950166113, Blast_Score=540, Evalue=1e-154, Organism=Saccharomyces cerevisiae, GI6323098, Length=158, Percent_Identity=37.3417721518987, Blast_Score=106, Evalue=8e-24, Organism=Saccharomyces cerevisiae, GI6324707, Length=144, Percent_Identity=41.6666666666667, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6320593, Length=144, Percent_Identity=41.6666666666667, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6322359, Length=115, Percent_Identity=38.2608695652174, Blast_Score=93, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6324166, Length=145, Percent_Identity=38.6206896551724, Blast_Score=81, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6325337, Length=274, Percent_Identity=27.3722627737226, Blast_Score=71, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6319594, Length=274, Percent_Identity=27.3722627737226, Blast_Score=71, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6324761, Length=338, Percent_Identity=25.4437869822485, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI78706572, Length=602, Percent_Identity=44.3521594684385, Blast_Score=543, Evalue=1e-155, Organism=Drosophila melanogaster, GI28574573, Length=197, Percent_Identity=38.0710659898477, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI24582462, Length=153, Percent_Identity=37.9084967320261, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI221458488, Length=149, Percent_Identity=38.9261744966443, Blast_Score=93, Evalue=6e-19, Organism=Drosophila melanogaster, GI24585709, Length=149, Percent_Identity=35.5704697986577, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI24585711, Length=149, Percent_Identity=35.5704697986577, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI24585713, Length=149, Percent_Identity=35.5704697986577, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI21357743, Length=133, Percent_Identity=36.0902255639098, Blast_Score=83, Evalue=6e-16, Organism=Drosophila melanogaster, GI28572034, Length=226, Percent_Identity=29.2035398230088, Blast_Score=78, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LEPA_SHEHH (B0TIV5)
Other databases:
- EMBL: CP000931 - RefSeq: YP_001673309.1 - ProteinModelPortal: B0TIV5 - SMR: B0TIV5 - GeneID: 5903267 - GenomeReviews: CP000931_GR - KEGG: shl:Shal_1081 - HOGENOM: HBG286375 - OMA: YDSYRGV - ProtClustDB: PRK05433 - BioCyc: SHAL458817:SHAL_1081-MONOMER - GO: GO:0006412 - HAMAP: MF_00071 - InterPro: IPR009022 - InterPro: IPR006297 - InterPro: IPR013842 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - Gene3D: G3DSA:3.30.70.240 - PRINTS: PR00315 - SMART: SM00838 - TIGRFAMs: TIGR01393 - TIGRFAMs: TIGR00231
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF06421 LepA_C; SSF54980 EFG_III_V; SSF50447 Translat_factor
EC number: NA
Molecular weight: Translated: 65799; Mature: 65799
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHIRNFSIIAHIDHGKSTLSDRLIQECGGLTDREMAAQVLDSMDIERERGITIKAQSVT CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCEEEEEEEE LDYLANDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAL EEEEECCCCEEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH EMDMDVVPVLNKIDLPQADPDRVAEEIEDIVGIEATDAVRCSAKTGVGIKDVLEVIVAQI HCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHC PPPEGDPEGPLQALIIDSWFDSYLGVVSLVRIKNGVLKKGDKFKVMSTGQNYNADRVGIF CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEE TPKQTDTTELKTGEVGFVIAGIKEIHGAPVGDTLTHSKHGAEKALAGFKKVKPQVYAGLF CCCCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCEE PISTDDYENFRDALNKLSLNDASLFFEPETSSALGFGFRIGFLGLLHMEIIQERLEREYN CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC LELITTAPTVVYEIVQTNGETIYVDNPSDLPAINNIAEMREPIVETNILVPKEYLGNVIT EEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LCIEKRGVQTNLVYHGNQVALTYELPMAEVVMDFFDRLKSTSRGYASLEYNFIRFEPADM HHHHHCCCEEEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE VRLDILINGDRVDALAMIIHKGLIRSKGLALVNKMKELIPRQMFDIAVQAAVGSQIIARS EEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIKAMRKDVTAKCYGGDVSRKKKLLNKQKEGKKRMKQVGNVEVPQEAFLAVLKLND HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEECC >Mature Secondary Structure MKHIRNFSIIAHIDHGKSTLSDRLIQECGGLTDREMAAQVLDSMDIERERGITIKAQSVT CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCCEEEEEEEE LDYLANDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAL EEEEECCCCEEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH EMDMDVVPVLNKIDLPQADPDRVAEEIEDIVGIEATDAVRCSAKTGVGIKDVLEVIVAQI HCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHC PPPEGDPEGPLQALIIDSWFDSYLGVVSLVRIKNGVLKKGDKFKVMSTGQNYNADRVGIF CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEE TPKQTDTTELKTGEVGFVIAGIKEIHGAPVGDTLTHSKHGAEKALAGFKKVKPQVYAGLF CCCCCCCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCEE PISTDDYENFRDALNKLSLNDASLFFEPETSSALGFGFRIGFLGLLHMEIIQERLEREYN CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC LELITTAPTVVYEIVQTNGETIYVDNPSDLPAINNIAEMREPIVETNILVPKEYLGNVIT EEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LCIEKRGVQTNLVYHGNQVALTYELPMAEVVMDFFDRLKSTSRGYASLEYNFIRFEPADM HHHHHCCCEEEEEEECCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE VRLDILINGDRVDALAMIIHKGLIRSKGLALVNKMKELIPRQMFDIAVQAAVGSQIIARS EEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIKAMRKDVTAKCYGGDVSRKKKLLNKQKEGKKRMKQVGNVEVPQEAFLAVLKLND HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA