| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is arcB [H]
Identifier: 167622997
GI number: 167622997
Start: 1301674
End: 1302039
Strand: Direct
Name: arcB [H]
Synonym: Shal_1063
Alternate gene names: 167622997
Gene position: 1301674-1302039 (Clockwise)
Preceding gene: 167622996
Following gene: 167622998
Centisome position: 24.9
GC content: 42.62
Gene sequence:
>366_bases ATGGCAGCAACTGAACTAGAATCAATCCTAGATCTTAATACACTGGAGCAGTACTGCAGTGCAATTGGTGCCGGTACGCT ACTTAAAAGCGTCGTTTTATTTGAACAACTTATGCCCGAGTATGTTGGCAACCTAGTTAGTGCACAGGAAGCAAACGATA AAGATACACTTTGCAGCGAAGCGCACAAGTTCAAAGGTGCTGCAGGATCTGTAGGCCTTAAACGTATTCAGCAATATGCC CAGTTATTACAACATGGTGAAGAAGCTGGGTGGGAACAAGGGCATGCTGCATGGTTGAGTGAAATTGTTGCCTATGCATC AAAAGATCTACAGCAATTAAAAGAATATTTGGAGTCTAAGGCTTAA
Upstream 100 bases:
>100_bases GAGGCTCATGCGACGCTAGGTGTTGCGCCTGTGATTATAGCGGGTATTATGTGGTAAAATTGGTTTTTGTATACACGACA ATATTTTGAGAGGTGCCTAA
Downstream 100 bases:
>100_bases TTGACCTAGCTTCAAAATTGATAGCGCAGTTTGGATTTATCCACTGCGCTATTTTTTTATCTGGAGTTTACAGAAGAATA TCTTGTACATTTTTGATTCA
Product: Hpt protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MAATELESILDLNTLEQYCSAIGAGTLLKSVVLFEQLMPEYVGNLVSAQEANDKDTLCSEAHKFKGAAGSVGLKRIQQYA QLLQHGEEAGWEQGHAAWLSEIVAYASKDLQQLKEYLESKA
Sequences:
>Translated_121_residues MAATELESILDLNTLEQYCSAIGAGTLLKSVVLFEQLMPEYVGNLVSAQEANDKDTLCSEAHKFKGAAGSVGLKRIQQYA QLLQHGEEAGWEQGHAAWLSEIVAYASKDLQQLKEYLESKA >Mature_120_residues AATELESILDLNTLEQYCSAIGAGTLLKSVVLFEQLMPEYVGNLVSAQEANDKDTLCSEAHKFKGAAGSVGLKRIQQYAQ LLQHGEEAGWEQGHAAWLSEIVAYASKDLQQLKEYLESKA
Specific function: Member of the two-component regulatory system ArcB/ArcA. Sensor-regulator protein for anaerobic repression of the arc modulon. Activates ArcA via a four-step phosphorelay. ArcB can also dephosphorylate ArcA by a reverse phosphorelay involving His- 717 and
COG id: COG2198
COG function: function code T; FOG: HPt domain
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=111, Percent_Identity=37.8378378378378, Blast_Score=84, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR008207 - InterPro: IPR014409 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF01627 Hpt; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 13232; Mature: 13101
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: PS50894 HPT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATELESILDLNTLEQYCSAIGAGTLLKSVVLFEQLMPEYVGNLVSAQEANDKDTLCSE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AHKFKGAAGSVGLKRIQQYAQLLQHGEEAGWEQGHAAWLSEIVAYASKDLQQLKEYLESK HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC A C >Mature Secondary Structure AATELESILDLNTLEQYCSAIGAGTLLKSVVLFEQLMPEYVGNLVSAQEANDKDTLCSE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AHKFKGAAGSVGLKRIQQYAQLLQHGEEAGWEQGHAAWLSEIVAYASKDLQQLKEYLESK HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]