| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is exeA [H]
Identifier: 167622957
GI number: 167622957
Start: 1248196
End: 1249809
Strand: Direct
Name: exeA [H]
Synonym: Shal_1018
Alternate gene names: 167622957
Gene position: 1248196-1249809 (Clockwise)
Preceding gene: 167622954
Following gene: 167622958
Centisome position: 23.88
GC content: 47.4
Gene sequence:
>1614_bases ATGTATAAGGCTTTCTTTGGCTTAAATGACAATCCATTTTCTATCGCGCCGAACCCTCATTATCTGTTTTTGAGTGATCG CCATAGAGAAGCTTTGGCACATCTTACTTATGGACTGGGTGAAACCGGTGGTTTTGTATTGTTAACCGGTGAGGTCGGGA CTGGGAAAACTACTGTTTCTCGCTGCCTACTTAAACAGCTTCCAGACAATACCGATACGGCATTTATATTAAATCCCTCA CTGACAGAGTCTGAATTACTGGCAACACTGTGTGATGAGTTAGGGATTGTTTATGGTGAAAATCCGAGCCTTAAACAGCT TACTGATCTCATCAGTAAGTTCCTGCTTGAGAATCACAGTAAAGGCCGTAATACGGTATTGATCATCGATGAGGCGCAGC ACTTAAGGGCTGAGGTTCTTGAGCAATTGAGGCTACTCACTAATCTAGAAACAGATACTAAAAAGCTACTGCAAGTTATT TTGATTGGTCAGCCTGAGTTACAGCAACTGCTTAAAAGACAAGAGCTGCGCCAATTGGCCCAGCGAATTACCGCCCGCTA TCATCTATTACCTTTAACCCTTGAAGAAGTTGCGCTATATGTACAGCATCGACTACAGGTCGCCGGGCGTCATGAGCCGC TGTTCCACAAGAGTGCGATTAAGGCGCTGCACAAATATAGTGATGGCATTCCAAGGCTGATAAACTTGCTATGTGAGCGT GCATTAATGGCCAGTTATGCTCAATCTAAAGTGCCTATCGATAATAAAATGGTGCGCTTGGCTTCAGCTGAGGTGTTAGG TGAAGAGCCACAGAAGAGGAGTCTGTTGCTACCTGCCGGGATCGCAGCGTCGCTGCTTGCTACCTTTGGTATCGCTTTTT ACCTGTTTAGTCCATCTGGCATGATAGCGAGTCCCAGTGTCGAGGCGACACAAGCTGCGCCAGTGGCCCAGGTGATCCCC GCTAAGCAGGAGACGAGTAGTAACCACTTAAGCAATAGCCAACGCGTACTTAATACTGCTATCTCGCAAAGCCGTGATAT TGATACTGCTTACGCCAGTATTTTGGGGTTGTGGGGTAAGGTCCCTTACATTGGGCTATCGGCGTGCCAATCGGCAAAGC AGCAGGGACTAGACTGTTTCCAGCAACAGGGGAATTGGCACTCTTTAGTACGCCTAAATTATCCTGCGGTTGTCTATATG GTCGATGATAACGATCAAGCATTTTATGGCACTGTGGTGTCACGTCAGGGCGAACAAATTTTGTTGCAGCTTGATGAGCA GCAACTATGGGTGAGCCGAGACTGGTTTAATCGTCACTTTACCGGCACCTTTGAACTCCTGTGGCAAGCGCCTCAACATC AGCCTAAAGAGATAGGCCAGTCGGCCAATCAGGCGCAGATCCAATGGTTAGAGAATAGTTTGGCGCGCATTACCGATACT CCGCCGAGACTCGTTAGCCATTTTGACCCGCAGCTTGAGCAGAAGTTAAAGGCGTTTCAGCGTCAACATGGTTTGATTGC AGATGGGATCGCTGGTACGCAAACCCTTGTGCAGCTTAATCTGTATTTAAGTGATGCAGGGCCGCGACTCGGTCAAAGCC AGAGGTTGTATTAA
Upstream 100 bases:
>100_bases GTAATGTGATCCCTCGGTCGGTGTGTTTTTATTGCGCGTAATAGGTCTAGCCCGGTGGTAGTCACTGGGTCTACATGGTT TTAAAAGGATAAAAGCTCGC
Downstream 100 bases:
>100_bases TGTCGATTTTACTCGATGCAGTGACTCGAGATAAGCAACAATCTCAATCGATTACCCATGATGTGGTGTTAACTCCGAGG GCGCAATATAAGGCGAAGCA
Product: peptidoglycan-binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 537; Mature: 537
Protein sequence:
>537_residues MYKAFFGLNDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLKQLPDNTDTAFILNPS LTESELLATLCDELGIVYGENPSLKQLTDLISKFLLENHSKGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVI LIGQPELQQLLKRQELRQLAQRITARYHLLPLTLEEVALYVQHRLQVAGRHEPLFHKSAIKALHKYSDGIPRLINLLCER ALMASYAQSKVPIDNKMVRLASAEVLGEEPQKRSLLLPAGIAASLLATFGIAFYLFSPSGMIASPSVEATQAAPVAQVIP AKQETSSNHLSNSQRVLNTAISQSRDIDTAYASILGLWGKVPYIGLSACQSAKQQGLDCFQQQGNWHSLVRLNYPAVVYM VDDNDQAFYGTVVSRQGEQILLQLDEQQLWVSRDWFNRHFTGTFELLWQAPQHQPKEIGQSANQAQIQWLENSLARITDT PPRLVSHFDPQLEQKLKAFQRQHGLIADGIAGTQTLVQLNLYLSDAGPRLGQSQRLY
Sequences:
>Translated_537_residues MYKAFFGLNDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLKQLPDNTDTAFILNPS LTESELLATLCDELGIVYGENPSLKQLTDLISKFLLENHSKGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVI LIGQPELQQLLKRQELRQLAQRITARYHLLPLTLEEVALYVQHRLQVAGRHEPLFHKSAIKALHKYSDGIPRLINLLCER ALMASYAQSKVPIDNKMVRLASAEVLGEEPQKRSLLLPAGIAASLLATFGIAFYLFSPSGMIASPSVEATQAAPVAQVIP AKQETSSNHLSNSQRVLNTAISQSRDIDTAYASILGLWGKVPYIGLSACQSAKQQGLDCFQQQGNWHSLVRLNYPAVVYM VDDNDQAFYGTVVSRQGEQILLQLDEQQLWVSRDWFNRHFTGTFELLWQAPQHQPKEIGQSANQAQIQWLENSLARITDT PPRLVSHFDPQLEQKLKAFQRQHGLIADGIAGTQTLVQLNLYLSDAGPRLGQSQRLY >Mature_537_residues MYKAFFGLNDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLKQLPDNTDTAFILNPS LTESELLATLCDELGIVYGENPSLKQLTDLISKFLLENHSKGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVI LIGQPELQQLLKRQELRQLAQRITARYHLLPLTLEEVALYVQHRLQVAGRHEPLFHKSAIKALHKYSDGIPRLINLLCER ALMASYAQSKVPIDNKMVRLASAEVLGEEPQKRSLLLPAGIAASLLATFGIAFYLFSPSGMIASPSVEATQAAPVAQVIP AKQETSSNHLSNSQRVLNTAISQSRDIDTAYASILGLWGKVPYIGLSACQSAKQQGLDCFQQQGNWHSLVRLNYPAVVYM VDDNDQAFYGTVVSRQGEQILLQLDEQQLWVSRDWFNRHFTGTFELLWQAPQHQPKEIGQSANQAQIQWLENSLARITDT PPRLVSHFDPQLEQKLKAFQRQHGLIADGIAGTQTLVQLNLYLSDAGPRLGQSQRLY
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3267
COG function: function code U; Type II secretory pathway, component ExeA (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm. Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the exeA family [H]
Homologues:
Organism=Escherichia coli, GI1789720, Length=485, Percent_Identity=24.3298969072165, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR002477 [H]
Pfam domain/function: PF00004 AAA; PF01471 PG_binding_1 [H]
EC number: NA
Molecular weight: Translated: 60008; Mature: 60008
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKAFFGLNDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS CCEEEECCCCCCEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH RCLLKQLPDNTDTAFILNPSLTESELLATLCDELGIVYGENPSLKQLTDLISKFLLENHS HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCC KGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA CCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QRITARYHLLPLTLEEVALYVQHRLQVAGRHEPLFHKSAIKALHKYSDGIPRLINLLCER HHHHHHHEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH ALMASYAQSKVPIDNKMVRLASAEVLGEEPQKRSLLLPAGIAASLLATFGIAFYLFSPSG HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHEEECCCC MIASPSVEATQAAPVAQVIPAKQETSSNHLSNSQRVLNTAISQSRDIDTAYASILGLWGK CEECCCCCHHHCCCHHHHCCCCCCCCCHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC VPYIGLSACQSAKQQGLDCFQQQGNWHSLVRLNYPAVVYMVDDNDQAFYGTVVSRQGEQI CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCEEEHHHHHCCCCEE LLQLDEQQLWVSRDWFNRHFTGTFELLWQAPQHQPKEIGQSANQAQIQWLENSLARITDT EEEECCHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCC PPRLVSHFDPQLEQKLKAFQRQHGLIADGIAGTQTLVQLNLYLSDAGPRLGQSQRLY CHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MYKAFFGLNDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS CCEEEECCCCCCEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH RCLLKQLPDNTDTAFILNPSLTESELLATLCDELGIVYGENPSLKQLTDLISKFLLENHS HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCC KGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA CCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QRITARYHLLPLTLEEVALYVQHRLQVAGRHEPLFHKSAIKALHKYSDGIPRLINLLCER HHHHHHHEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH ALMASYAQSKVPIDNKMVRLASAEVLGEEPQKRSLLLPAGIAASLLATFGIAFYLFSPSG HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHEEECCCC MIASPSVEATQAAPVAQVIPAKQETSSNHLSNSQRVLNTAISQSRDIDTAYASILGLWGK CEECCCCCHHHCCCHHHHCCCCCCCCCHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC VPYIGLSACQSAKQQGLDCFQQQGNWHSLVRLNYPAVVYMVDDNDQAFYGTVVSRQGEQI CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCEEEHHHHHCCCCEE LLQLDEQQLWVSRDWFNRHFTGTFELLWQAPQHQPKEIGQSANQAQIQWLENSLARITDT EEEECCHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCC PPRLVSHFDPQLEQKLKAFQRQHGLIADGIAGTQTLVQLNLYLSDAGPRLGQSQRLY CHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961440 [H]