| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622891
Identifier: 167622891
GI number: 167622891
Start: 1167796
End: 1170759
Strand: Reverse
Name: 167622891
Synonym: Shal_0951
Alternate gene names: NA
Gene position: 1170759-1167796 (Counterclockwise)
Preceding gene: 167622893
Following gene: 167622889
Centisome position: 22.4
GC content: 49.22
Gene sequence:
>2964_bases ATGAAACCTTGGTTACTGTCGAGTTGCATATTACTAGGCTTATCGGCCTGCGGAGGGTCTGATGATTCAGATTCCGATGA TAATGGCGGCGTAACACCGCCCTTAGCTCAAGCACCAAGTGTTGAACTTGGTGGCGGGATTACCGCATGGAACGATAAGC TAATGAGCTTAACGGCCACAGTGAATATCTACGCCTCTGGTAGCTCAACATTTGAGTGGCAACAAGTCTCAGGGCCGGAG GTGTCACTATCAAGCGCCAGCGTTGATGGTGTGACTATCGATGCTAGAACACTCATGCAAGACAGCAGCATAACACTCAG CCTAACGGTTACCGATAGCAGTAATCAAACTGCTAGCGATCAGGTAACTATCCAGCTCAACGATAGAATTAGCACCGCGA TGGCAACTGGCGATGCCAGTATTGCCGCCGACCTCTCACCACAAATTGCCAAGCGAGCATTGACTCATATTGAGCAATAT CGCTCAGATGGCGAAACACTCATCAACAACATCTATCAAACTGGCGTAGTGGAGTATGACCAAGGTCGTCACTCACAGAT GATCCAACTTGCTGGCGCTGAGCATGCCTACCCGCAAAATAAAGCTTACGCCATCGTCACAGGCAACAAAGGCCTGACCT TTGCAGCCACCAATGATAAATCAGGTCAGCGCAATGCCGCTTTTGGTACCGATATCATTTCCAGCATGCAGCAAGGCAAT AACGCCAGTTTCGAACCAAGCTTTAAGCGTTTGCTCGGTTGGATGTTAGAACAAGATCAAGCAACCCTTGCAGAGCCTAA GCAGATAAGGTTGTTTTTGATGGGCGGTAGTACCGTTAATCGCATCAATAGCTGGATTGGCGAGCATTACCCCAATTGGC AAGTTGAAACCTGTAGCGATGAAGCAACACTCTCAAGCTGCTTGGCCGAGGCGAAACTGGTAATAACAGGCTCATCAGAA CTCTTCTCTATCGAGACCGTAGAGCCGCTTATCGCGCAAATACAAGCTGATAAACAACCACTGATCTATCTGCATCTACA CAGCTGGAATAGTGTACCCTTAACCCAAACCGTGCTTAACCCTATGGGATTTAGTATGCAGGGGCCTGGCGGGCCGGGGA ACTACTTCGCTCAAGACAAGGCTGATTGGCGCTCTGCAAGCACCATGCTTGAAAGCTACAGCGCACTCGACAGTGAGCAA CTATGGCTAACACTGTTTGACAATGAGCGAGTCGACTTCAATCTTGCCAACTGCGCCAGCAATTGTGACGCTAGATTTAA CGATGACTACCGTCCAGCTCTAGCGAGTATTCGTAGTAATATCCAAGCGATAGAAACAAGCAAACTTGATATCTTTAATC AGCCAGACTATTCCCTCTATAAGCTGCTTATTCTTTTAGGTGACAACTATCGTCAAGCTATCCTGTACCCGATGGATGTG GCCACCAGCGATAGCCTCCATTACCTTAAAGCCTATTACGCCGATCATAGCGTATATAACTTCCGCGATATTAATCCCGT ACAAAAAGATTTAGGTAACTTTAGCCGCAGCGACTTTAGCCATATCACAGCCGTTGACCAAACCGTTAACTTAACGAGTA AGAAAGGTTTCCGCTCTGTAGGCGTGTACGCCCTACCGGGGCAAACAATGAGTGTGACCCGCAGTGACAGCAGTGACGTG CGCACTTGGGTGTTTATCAACACACTACGCTCAGGCTCAACCCATGAGTTTGCCAGCAACGGTTACAATCGCCCAAAACT ACTGCAATCGACCCATATCGAAGTCAAAGCCGGTGAAACCATTAAATTCACCAGCCCTTATGGCGGACCGCTGCAGATCC GTTTTGATCAAACCGATCTGCCGACGCAGTTTAGCTTTAGCCAAGTTGGACTGCACCCATACTGGCGCGAAGGCATGGAT GGCAATAAGTTCATGCAGGACTTAGCAGCAAACCAATATGACTGGAGCGAGCTGGCAACAGCGCATTTTGAGGTGCACTC CAAGCTCGATAAGATGCAAAAGACCATGGAACATGAGCCACTTTGGAATACGCCAGAGAAGATGGCAAGCGCCATCATGA CGCAGGTGCATAACTACCCGCATCTGCTGGCAGGCTTTAAGGGACCCTTTATCGATGAGGTCGCAGAGATCAACGATTTT GCCGTGAACCAAGGCTGGCAAATCGATACCCTCGACACGGTCAAGCATATGAATGCCGACCAAGCCACCTGCGGCGCAGG CTGCTCAGGTAATCCATATGATGCTAGCTGGTCATTTAGTCCGACGGGCCATGGCGATATCCATGAACTAGGTCACGGGC TTGAAAAAGGCCGTCTGCGCTTCGATGGCCATGACGGTCACTCATCAACCAACCCATACTCCTACTACACTAAGTCTCGC GCTTATACTGAGCTAGGTAAACTGCCTTCTTGCCAAGGGCTCAATATTGATGATGAGTTTGCGGTGCTACAAGCGAGTAT GAATCAAGCTGACCCGTTCGCTTATATGCAAGAGGCTAAGCTTACCAGCTGGTCAAACGGTATGGCGACCATGCTGCAGA TGATGGTGGCAGCGCAAAAACACGGTGCATTGGAAAACGGTTGGCATCTGCTCGCTAGATTGCACATCTTACTGCGAGAG TTTGAACGGGCTAAGGGCGCTGAGGAGCTTTGGCTAGAGAAGCGTGCTCAGCTAGGCTTCAGTCAATTTAGCCTAGACGC AGCCAAGAACATCTCAAATAACGACTTCTTAATGGTGGCCATGAGTTACGCCACTAAACTGGATTATCGTGAGCTTTATC AGATGTGGGGCTTAGCTACCAGCCAAGCGGCCAAAGATCAGGTTGCAAGCTTTAACTTCAGTGTTATCGACAGGAAAATA TATGTCTACAACCCAGGGGATTACTGCCTAAGTTTAGATCTGCTGGCGGTTGCCGTCGATGGTCAGCAGCCGTGGCCACT GTAG
Upstream 100 bases:
>100_bases CTGCCTTACCCATTGTTTATTAAGGTTTATTCGCTGGATCCATTGATTTCAGTATCAAAAACACTCAAGATGTGAGCAAA TCTCAATATGTGTTAAAAAA
Downstream 100 bases:
>100_bases GCGGTTAGCCATACAATAAGCCGCTTTTAATAAAAAGCCATCTAATCGCAATCAGCATAATATTAGATGGTTTTTTTGTT TTACTTTCTGTTTTCGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 987; Mature: 987
Protein sequence:
>987_residues MKPWLLSSCILLGLSACGGSDDSDSDDNGGVTPPLAQAPSVELGGGITAWNDKLMSLTATVNIYASGSSTFEWQQVSGPE VSLSSASVDGVTIDARTLMQDSSITLSLTVTDSSNQTASDQVTIQLNDRISTAMATGDASIAADLSPQIAKRALTHIEQY RSDGETLINNIYQTGVVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKSGQRNAAFGTDIISSMQQGN NASFEPSFKRLLGWMLEQDQATLAEPKQIRLFLMGGSTVNRINSWIGEHYPNWQVETCSDEATLSSCLAEAKLVITGSSE LFSIETVEPLIAQIQADKQPLIYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWRSASTMLESYSALDSEQ LWLTLFDNERVDFNLANCASNCDARFNDDYRPALASIRSNIQAIETSKLDIFNQPDYSLYKLLILLGDNYRQAILYPMDV ATSDSLHYLKAYYADHSVYNFRDINPVQKDLGNFSRSDFSHITAVDQTVNLTSKKGFRSVGVYALPGQTMSVTRSDSSDV RTWVFINTLRSGSTHEFASNGYNRPKLLQSTHIEVKAGETIKFTSPYGGPLQIRFDQTDLPTQFSFSQVGLHPYWREGMD GNKFMQDLAANQYDWSELATAHFEVHSKLDKMQKTMEHEPLWNTPEKMASAIMTQVHNYPHLLAGFKGPFIDEVAEINDF AVNQGWQIDTLDTVKHMNADQATCGAGCSGNPYDASWSFSPTGHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSR AYTELGKLPSCQGLNIDDEFAVLQASMNQADPFAYMQEAKLTSWSNGMATMLQMMVAAQKHGALENGWHLLARLHILLRE FERAKGAEELWLEKRAQLGFSQFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLATSQAAKDQVASFNFSVIDRKI YVYNPGDYCLSLDLLAVAVDGQQPWPL
Sequences:
>Translated_987_residues MKPWLLSSCILLGLSACGGSDDSDSDDNGGVTPPLAQAPSVELGGGITAWNDKLMSLTATVNIYASGSSTFEWQQVSGPE VSLSSASVDGVTIDARTLMQDSSITLSLTVTDSSNQTASDQVTIQLNDRISTAMATGDASIAADLSPQIAKRALTHIEQY RSDGETLINNIYQTGVVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKSGQRNAAFGTDIISSMQQGN NASFEPSFKRLLGWMLEQDQATLAEPKQIRLFLMGGSTVNRINSWIGEHYPNWQVETCSDEATLSSCLAEAKLVITGSSE LFSIETVEPLIAQIQADKQPLIYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWRSASTMLESYSALDSEQ LWLTLFDNERVDFNLANCASNCDARFNDDYRPALASIRSNIQAIETSKLDIFNQPDYSLYKLLILLGDNYRQAILYPMDV ATSDSLHYLKAYYADHSVYNFRDINPVQKDLGNFSRSDFSHITAVDQTVNLTSKKGFRSVGVYALPGQTMSVTRSDSSDV RTWVFINTLRSGSTHEFASNGYNRPKLLQSTHIEVKAGETIKFTSPYGGPLQIRFDQTDLPTQFSFSQVGLHPYWREGMD GNKFMQDLAANQYDWSELATAHFEVHSKLDKMQKTMEHEPLWNTPEKMASAIMTQVHNYPHLLAGFKGPFIDEVAEINDF AVNQGWQIDTLDTVKHMNADQATCGAGCSGNPYDASWSFSPTGHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSR AYTELGKLPSCQGLNIDDEFAVLQASMNQADPFAYMQEAKLTSWSNGMATMLQMMVAAQKHGALENGWHLLARLHILLRE FERAKGAEELWLEKRAQLGFSQFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLATSQAAKDQVASFNFSVIDRKI YVYNPGDYCLSLDLLAVAVDGQQPWPL >Mature_987_residues MKPWLLSSCILLGLSACGGSDDSDSDDNGGVTPPLAQAPSVELGGGITAWNDKLMSLTATVNIYASGSSTFEWQQVSGPE VSLSSASVDGVTIDARTLMQDSSITLSLTVTDSSNQTASDQVTIQLNDRISTAMATGDASIAADLSPQIAKRALTHIEQY RSDGETLINNIYQTGVVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKSGQRNAAFGTDIISSMQQGN NASFEPSFKRLLGWMLEQDQATLAEPKQIRLFLMGGSTVNRINSWIGEHYPNWQVETCSDEATLSSCLAEAKLVITGSSE LFSIETVEPLIAQIQADKQPLIYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWRSASTMLESYSALDSEQ LWLTLFDNERVDFNLANCASNCDARFNDDYRPALASIRSNIQAIETSKLDIFNQPDYSLYKLLILLGDNYRQAILYPMDV ATSDSLHYLKAYYADHSVYNFRDINPVQKDLGNFSRSDFSHITAVDQTVNLTSKKGFRSVGVYALPGQTMSVTRSDSSDV RTWVFINTLRSGSTHEFASNGYNRPKLLQSTHIEVKAGETIKFTSPYGGPLQIRFDQTDLPTQFSFSQVGLHPYWREGMD GNKFMQDLAANQYDWSELATAHFEVHSKLDKMQKTMEHEPLWNTPEKMASAIMTQVHNYPHLLAGFKGPFIDEVAEINDF AVNQGWQIDTLDTVKHMNADQATCGAGCSGNPYDASWSFSPTGHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSR AYTELGKLPSCQGLNIDDEFAVLQASMNQADPFAYMQEAKLTSWSNGMATMLQMMVAAQKHGALENGWHLLARLHILLRE FERAKGAEELWLEKRAQLGFSQFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLATSQAAKDQVASFNFSVIDRKI YVYNPGDYCLSLDLLAVAVDGQQPWPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109210; Mature: 109210
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPWLLSSCILLGLSACGGSDDSDSDDNGGVTPPLAQAPSVELGGGITAWNDKLMSLTAT CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCEEEEEEE VNIYASGSSTFEWQQVSGPEVSLSSASVDGVTIDARTLMQDSSITLSLTVTDSSNQTASD EEEEECCCCCEEEEECCCCCEEECCCCCCCEEEEHHHHCCCCCEEEEEEEECCCCCCCCC QVTIQLNDRISTAMATGDASIAADLSPQIAKRALTHIEQYRSDGETLINNIYQTGVVEYD EEEEEECCCEEEHEECCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEC QGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKSGQRNAAFGTDIISSMQQGN CCCCCHHEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC NASFEPSFKRLLGWMLEQDQATLAEPKQIRLFLMGGSTVNRINSWIGEHYPNWQVETCSD CCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCC EATLSSCLAEAKLVITGSSELFSIETVEPLIAQIQADKQPLIYLHLHSWNSVPLTQTVLN HHHHHHHHHCCEEEEECCCCEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHC PMGFSMQGPGGPGNYFAQDKADWRSASTMLESYSALDSEQLWLTLFDNERVDFNLANCAS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHCC NCDARFNDDYRPALASIRSNIQAIETSKLDIFNQPDYSLYKLLILLGDNYRQAILYPMDV CCCCCCCCCHHHHHHHHHHHHHHEECCCCEECCCCCHHHHEEEEHCCCCCCEEEEEEECC ATSDSLHYLKAYYADHSVYNFRDINPVQKDLGNFSRSDFSHITAVDQTVNLTSKKGFRSV CCCCCHHHHHHHHCCCCEECCCCCCHHHHHHCCCCCCCCHHHEEHHHHCCCCCCCCCCCC GVYALPGQTMSVTRSDSSDVRTWVFINTLRSGSTHEFASNGYNRPKLLQSTHIEVKAGET CEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCEEEEECCCE IKFTSPYGGPLQIRFDQTDLPTQFSFSQVGLHPYWREGMDGNKFMQDLAANQYDWSELAT EEEECCCCCEEEEEECCCCCCCCCCHHHCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHH AHFEVHSKLDKMQKTMEHEPLWNTPEKMASAIMTQVHNYPHLLAGFKGPFIDEVAEINDF HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCHH AVNQGWQIDTLDTVKHMNADQATCGAGCSGNPYDASWSFSPTGHGDIHELGHGLEKGRLR HCCCCCEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCEE FDGHDGHSSTNPYSYYTKSRAYTELGKLPSCQGLNIDDEFAVLQASMNQADPFAYMQEAK ECCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH LTSWSNGMATMLQMMVAAQKHGALENGWHLLARLHILLREFERAKGAEELWLEKRAQLGF CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC SQFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLATSQAAKDQVASFNFSVIDRKI HHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEEE YVYNPGDYCLSLDLLAVAVDGQQPWPL EEECCCCEEEEEEEEEEEECCCCCCCC >Mature Secondary Structure MKPWLLSSCILLGLSACGGSDDSDSDDNGGVTPPLAQAPSVELGGGITAWNDKLMSLTAT CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCEEEEEEE VNIYASGSSTFEWQQVSGPEVSLSSASVDGVTIDARTLMQDSSITLSLTVTDSSNQTASD EEEEECCCCCEEEEECCCCCEEECCCCCCCEEEEHHHHCCCCCEEEEEEEECCCCCCCCC QVTIQLNDRISTAMATGDASIAADLSPQIAKRALTHIEQYRSDGETLINNIYQTGVVEYD EEEEEECCCEEEHEECCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEC QGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKSGQRNAAFGTDIISSMQQGN CCCCCHHEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC NASFEPSFKRLLGWMLEQDQATLAEPKQIRLFLMGGSTVNRINSWIGEHYPNWQVETCSD CCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCC EATLSSCLAEAKLVITGSSELFSIETVEPLIAQIQADKQPLIYLHLHSWNSVPLTQTVLN HHHHHHHHHCCEEEEECCCCEEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHC PMGFSMQGPGGPGNYFAQDKADWRSASTMLESYSALDSEQLWLTLFDNERVDFNLANCAS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHCC NCDARFNDDYRPALASIRSNIQAIETSKLDIFNQPDYSLYKLLILLGDNYRQAILYPMDV CCCCCCCCCHHHHHHHHHHHHHHEECCCCEECCCCCHHHHEEEEHCCCCCCEEEEEEECC ATSDSLHYLKAYYADHSVYNFRDINPVQKDLGNFSRSDFSHITAVDQTVNLTSKKGFRSV CCCCCHHHHHHHHCCCCEECCCCCCHHHHHHCCCCCCCCHHHEEHHHHCCCCCCCCCCCC GVYALPGQTMSVTRSDSSDVRTWVFINTLRSGSTHEFASNGYNRPKLLQSTHIEVKAGET CEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCEEEEECCCE IKFTSPYGGPLQIRFDQTDLPTQFSFSQVGLHPYWREGMDGNKFMQDLAANQYDWSELAT EEEECCCCCEEEEEECCCCCCCCCCHHHCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHH AHFEVHSKLDKMQKTMEHEPLWNTPEKMASAIMTQVHNYPHLLAGFKGPFIDEVAEINDF HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCHH AVNQGWQIDTLDTVKHMNADQATCGAGCSGNPYDASWSFSPTGHGDIHELGHGLEKGRLR HCCCCCEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCEE FDGHDGHSSTNPYSYYTKSRAYTELGKLPSCQGLNIDDEFAVLQASMNQADPFAYMQEAK ECCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH LTSWSNGMATMLQMMVAAQKHGALENGWHLLARLHILLREFERAKGAEELWLEKRAQLGF CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC SQFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLATSQAAKDQVASFNFSVIDRKI HHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEEE YVYNPGDYCLSLDLLAVAVDGQQPWPL EEECCCCEEEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA