Click here to switch to the map view.

The map label for this gene is 167622889

Identifier: 167622889

GI number: 167622889

Start: 1165674

End: 1166483

Strand: Reverse

Name: 167622889

Synonym: Shal_0949

Alternate gene names: NA

Gene position: 1166483-1165674 (Counterclockwise)

Preceding gene: 167622891

Following gene: 167622888

Centisome position: 22.32

GC content: 50.0

Gene sequence:

>810_bases
ATGTTTACTTCAATTCGCCCCGCTGCGGTTGCGGGTCTATTCTACCCAGCTGCTCCTGATGAGCTTAGGGCAATGCTCGA
GGGCTATTTAGCTCGGGCTAGAATGAGCCTTATTAGCCAAGCAAATACTCAGCACTCCCAAGCTAAAGTCATTATTGTGC
CCCACGCAGGTTATATCTATTCAGGCCTAGTCGCAGCCCATGCTTACGTCTTGATTGAGTCGATGGCTGCTACCGTCAAC
AAGGTGCTGCTAATCGGCCCTGCCCATCGAGTTTACCTACAGGGAGGCGCGCTGCCACAAAGCCAATATTTTGAAACGCC
ATTGGGTCAGATAAGCATTGATAAGCGCAGCGTGGAGATGTTGGAGTCTAATCCGCATATTACTGTCTCAGACCTTCCCC
ACCAGCAAGAGCATTGCCTCGAGGTGCAACTGCCGTTCCTGCAGCATTGCCTCAATCAATTTGAGCTAATTCCACTATTA
ATTGGCGAGAGCGATCCCCAAGAGACGGCAAAGCTATTAGAGCAACTATGGGGAGGAGAGGAAACTTTAGTGGTGGTAAG
CACAGACTTAAGTCATTTTCATCGATATGCTGAAGCGACTCACCTCGACAAGCTAACTTGCCAGAAAATTTTACAGGGGC
TGGAAACTATCTTCCCCGAGCAAGCCTGCGGAAGCTTCTGCCTCAACGCACTAATGCTGCAACTTAAACGTCACCAGCTG
TGCCTTACCCAATTGAGTTATCAAAACTCCGGCGACACCGCCGGAGACAAAAATCGAGTCGTCGGCTATGCCAGCTTTGC
CAGCCGTTAA

Upstream 100 bases:

>100_bases
CGTAATCACTCCGTGGTTTGTAGACATAAATACGTCCCAAGGGCGCTATCTCAGTGAGCTATACTTAAAGCCTAGTTTAA
AATCTTGAGCTCATCAGCCT

Downstream 100 bases:

>100_bases
ACTCAGCCAATCAGAGAAGCGGCAACTGCTAACTATAGTCCGTGACACGCTTATTGCAGCCTTTTACCCTGACTATGTTG
TAAAAAAACAACGGCAACTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFTSIRPAAVAGLFYPAAPDELRAMLEGYLARARMSLISQANTQHSQAKVIIVPHAGYIYSGLVAAHAYVLIESMAATVN
KVLLIGPAHRVYLQGGALPQSQYFETPLGQISIDKRSVEMLESNPHITVSDLPHQQEHCLEVQLPFLQHCLNQFELIPLL
IGESDPQETAKLLEQLWGGEETLVVVSTDLSHFHRYAEATHLDKLTCQKILQGLETIFPEQACGSFCLNALMLQLKRHQL
CLTQLSYQNSGDTAGDKNRVVGYASFASR

Sequences:

>Translated_269_residues
MFTSIRPAAVAGLFYPAAPDELRAMLEGYLARARMSLISQANTQHSQAKVIIVPHAGYIYSGLVAAHAYVLIESMAATVN
KVLLIGPAHRVYLQGGALPQSQYFETPLGQISIDKRSVEMLESNPHITVSDLPHQQEHCLEVQLPFLQHCLNQFELIPLL
IGESDPQETAKLLEQLWGGEETLVVVSTDLSHFHRYAEATHLDKLTCQKILQGLETIFPEQACGSFCLNALMLQLKRHQL
CLTQLSYQNSGDTAGDKNRVVGYASFASR
>Mature_269_residues
MFTSIRPAAVAGLFYPAAPDELRAMLEGYLARARMSLISQANTQHSQAKVIIVPHAGYIYSGLVAAHAYVLIESMAATVN
KVLLIGPAHRVYLQGGALPQSQYFETPLGQISIDKRSVEMLESNPHITVSDLPHQQEHCLEVQLPFLQHCLNQFELIPLL
IGESDPQETAKLLEQLWGGEETLVVVSTDLSHFHRYAEATHLDKLTCQKILQGLETIFPEQACGSFCLNALMLQLKRHQL
CLTQLSYQNSGDTAGDKNRVVGYASFASR

Specific function: Unknown

COG id: COG1355

COG function: function code R; Predicted dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0103 family [H]

Homologues:

Organism=Homo sapiens, GI7705720, Length=297, Percent_Identity=28.956228956229, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI212286159, Length=297, Percent_Identity=25.2525252525253, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI25146594, Length=194, Percent_Identity=30.4123711340206, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32566861, Length=194, Percent_Identity=30.4123711340206, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6322467, Length=216, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357419, Length=223, Percent_Identity=31.390134529148, Blast_Score=106, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020619
- InterPro:   IPR002737 [H]

Pfam domain/function: PF01875 Memo [H]

EC number: NA

Molecular weight: Translated: 29755; Mature: 29755

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTSIRPAAVAGLFYPAAPDELRAMLEGYLARARMSLISQANTQHSQAKVIIVPHAGYIY
CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH
SGLVAAHAYVLIESMAATVNKVLLIGPAHRVYLQGGALPQSQYFETPLGQISIDKRSVEM
HHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEECCCCCCHHHHCCCCCCEEECHHHHHH
LESNPHITVSDLPHQQEHCLEVQLPFLQHCLNQFELIPLLIGESDPQETAKLLEQLWGGE
HHCCCCEEECCCCCCHHHHHEECCHHHHHHHHHHHEEHHEECCCCHHHHHHHHHHHHCCC
ETLVVVSTDLSHFHRYAEATHLDKLTCQKILQGLETIFPEQACGSFCLNALMLQLKRHQL
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
CLTQLSYQNSGDTAGDKNRVVGYASFASR
HHHHHHCCCCCCCCCCCCCEEEEHHHCCC
>Mature Secondary Structure
MFTSIRPAAVAGLFYPAAPDELRAMLEGYLARARMSLISQANTQHSQAKVIIVPHAGYIY
CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH
SGLVAAHAYVLIESMAATVNKVLLIGPAHRVYLQGGALPQSQYFETPLGQISIDKRSVEM
HHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEECCCCCCHHHHCCCCCCEEECHHHHHH
LESNPHITVSDLPHQQEHCLEVQLPFLQHCLNQFELIPLLIGESDPQETAKLLEQLWGGE
HHCCCCEEECCCCCCHHHHHEECCHHHHHHHHHHHEEHHEECCCCHHHHHHHHHHHHCCC
ETLVVVSTDLSHFHRYAEATHLDKLTCQKILQGLETIFPEQACGSFCLNALMLQLKRHQL
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
CLTQLSYQNSGDTAGDKNRVVGYASFASR
HHHHHHCCCCCCCCCCCCCEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA