Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is yeaR [H]

Identifier: 167622876

GI number: 167622876

Start: 1154279

End: 1154614

Strand: Direct

Name: yeaR [H]

Synonym: Shal_0936

Alternate gene names: 167622876

Gene position: 1154279-1154614 (Clockwise)

Preceding gene: 167622874

Following gene: 167622880

Centisome position: 22.08

GC content: 44.94

Gene sequence:

>336_bases
ATGACTAAGATCCCTACTGATTACGTTAATTATAAATCCACACCGGTATTTGAAAAAGATAATGTGCCCAAGATGTTTCT
TCATCTGCATAACACTAAGGCTGGCGTCTACGGTCAAATTCAGGTGTTAAGCGGAGCGCTTAAGTTCTACGGGTTCAGAG
ATAGGCGAGGTGAGGTGGAGCAAGAGCTCATTCTCAAGGCCGGCGATACAGGGGTGTCACCTCCTCAGTATTGGCACAAG
GTGGAGTTTCTCACCGATGATACACAATTTAGAGTCGATTTTTGGGCGCAACAGAGCTCAGATATTGTTGTTCAAAACCT
ATCTGAGCGTGATTGA

Upstream 100 bases:

>100_bases
TATCGGTATAAGTGCGGCTGATTATAGTGCTTAGTTTGCTGATAGTCGCTTAACTTGAGCTTAAATAGCATTAATTAGAT
TTTATATATAAGGATTGAGT

Downstream 100 bases:

>100_bases
AGCCTTCAATTATTACGACTTTATTGGGAGAAAGTTGGGGGAATTAGTGCAGGTGGGGCTTGATCGCTAAGATATCGCAT
TTAAGTTCATCGACGAGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MTKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVEQELILKAGDTGVSPPQYWHK
VEFLTDDTQFRVDFWAQQSSDIVVQNLSERD

Sequences:

>Translated_111_residues
MTKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVEQELILKAGDTGVSPPQYWHK
VEFLTDDTQFRVDFWAQQSSDIVVQNLSERD
>Mature_110_residues
TKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVEQELILKAGDTGVSPPQYWHKV
EFLTDDTQFRVDFWAQQSSDIVVQNLSERD

Specific function: Unknown

COG id: COG3615

COG function: function code P; Uncharacterized protein/domain, possibly involved in tellurite resistance

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788098, Length=114, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015392
- InterPro:   IPR014710
- InterPro:   IPR014510 [H]

Pfam domain/function: PF09313 DUF1971 [H]

EC number: NA

Molecular weight: Translated: 12857; Mature: 12725

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVE
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCC
QELILKAGDTGVSPPQYWHKVEFLTDDTQFRVDFWAQQSSDIVVQNLSERD
HHHEEECCCCCCCCHHHHEEEEEEECCCEEEEEEECCCCCCEEEECCCCCC
>Mature Secondary Structure 
TKIPTDYVNYKSTPVFEKDNVPKMFLHLHNTKAGVYGQIQVLSGALKFYGFRDRRGEVE
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCC
QELILKAGDTGVSPPQYWHKVEFLTDDTQFRVDFWAQQSSDIVVQNLSERD
HHHEEECCCCCCCCHHHHEEEEEEECCCEEEEEEECCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]