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The map label for this gene is hlyB [H]

Identifier: 167622852

GI number: 167622852

Start: 1130408

End: 1132429

Strand: Reverse

Name: hlyB [H]

Synonym: Shal_0912

Alternate gene names: 167622852

Gene position: 1132429-1130408 (Counterclockwise)

Preceding gene: 167622853

Following gene: 167622844

Centisome position: 21.67

GC content: 45.45

Gene sequence:

>2022_bases
ATGAAGTTAAATGTAGCCACTAGAGTGATAGGTGGGTTTACGGTAATCACTTTACTGCTAATCGTACTCGGCGCCGCGTC
TTGGTTCACCAACAATCAGCTAAAAAGCAGTACTCAAGTTCTACAAGAATTAAGCCTTCCAGCCCTAGAATCTAGTAATT
TGCTTTCGCAAACACTATCGACGCAAGAAAAACAAATTTTAGTAGCCTATCACAGTAAGAGTGAGGCCGAGATCCCAGCA
ATTAATTCACAATTTTCTGCAGCCAATCAGACTTTTGAGAGTGAGCTAAAAAAGCTTGCAGCTTTAGTCAGCAACAACTC
AGATTTAAATGCCATCATTCAAAACCTTGATAATCAATACGCAAAATTCAATACAGTTAGTCAAGAGCTGATCACGACTC
ACGAAACAGCATTAGTGACCACAAAGGAAATTAGCAGTAAATATGATGGCATCGAAATAACCGTCGATGACAATGCCTCT
CTGTTACTTGATTTAATCGATCTGGAAATGAGCGAAGATGTCGTTGAACAAGAAATAGCGGCTACAGCAAGTAATTTAGA
ACTTAGTTTTAGCAGTATCGTCAGCACTAGCTTTGACTTGATAGCCAGCACCGACAAGTCAAAGTTCGATACTATTTCAA
AAGAGCTAGACTATATCGTTAGTGATACCAAGAGCAAAGTCGATTACGTCACTAACCACTGGGAAGGTGTCGTGGATACG
GAGCTCATTAACGAGCTTAATGCTGAAGCGAGCAAAGTGTTTAGCATGGTTAAAGGCAATAACTCACTCATCGTACTCAA
ACAAAAAGAACTCGATCTAAATCAAGCAGCAGTCGGTTTACTTACCGATGTTGAACGAGCAGCAACTAACGTCAATCAAC
AGATGAAAACGTTAACAACTAATATCGAATCCATCTCTCGTGAGATCAGTAGCGATGCCATAGCCAACATCGACAGCGCG
AGTATGCGTACAGTGCTTTTGATGATGGTAGCAATTATCGTCGCAGTCGTTGTGAGTATCGCTGTCGTACGCCCCCTGAC
TCGCTCACTCGAGAAAGTAAACCATGCACTAAACGTGTTGGCATCGGGTGACTTAACCCACAAGCTCGATGACTCAGGCC
ATGACGAATTCGCTAAATTGTCAGCCAACTGCAACAAACTTGTCGATAGCCTAAGAAACTTGATCCAAGGGATCTTAGAT
CGCTCTGATCAGCTTGCAGCCGCAGCCGAGGAAACCTCCGCGATTACGGCGCAGACCACTGTCGGAATTCAAGAACAAAA
GAGCCAAGTTGATCAAGTGGCAACGGCGACAACTCAGCTAAGCTCTAGCGCTCAACAGGTTACCGCCAGTGCCGATGAAG
CCCTAAGCCAAATAAAAGCTGCAGATGATGAAAGCCAGCATATGCGTTTAATCGCTGACGAAAATAAGCGCACTATTCTT
GCCCTAGCCGATGAAGTGTCTAAAGCCAGCATAGTCATCAACAAGGTGCATGCCGATAGCGCCTCCATTGGCTCTATTCT
TGATGTAATTCGCGGCATTGCAGAACAGACAAACCTACTCGCACTTAACGCTGCAATCGAAGCTGCACGAGCAGGCGAAC
AAGGCCGAGGTTTTGCCGTTGTTGCCGATGAAGTTCGCAGCCTTGCATCGAGAACTCAAGACTCCACCCAAGAGATCCAA
CAGATGATTGAAGTCCTTCAACAAGGGACACAAGAAGCCGTCGCTGTAATGGACCTAGGACGCACACAGGCAAGCTCCTG
CGTTGAAAAAACAGAACAAGCTAACAATGCTCTAGAAAGTATTAGCGACGCTGTACACCGCGCTCATGACTCAGGAACTC
ATATTGCTCATGCCGCTCAGGAGCAGAACCTAGTGAGTCAGCAGGTATCAGAGAAGCTAGAACATATTGCCGCCATTTCA
GAGGAGACCTCAACAGGTGCCGAGCAAACTGCCCAGTCTAGCCATCAGGTGGCACAGTTAGCCGAAGAGTTACAGGCTTC
GGTAAAAGAGTTCAAAGTCTAG

Upstream 100 bases:

>100_bases
AAAAGAGTTAAACTATCGCTAAATTTGGCCGATAAAGTATTCGTTCTGCGTGTGAAGCGGATGCTGTGACTTGGATAAAA
ATAATAAAAATGGAGCTCCT

Downstream 100 bases:

>100_bases
AGTGATCACAGTGAGGCTCTGACGCTGTTAACTATGAGTTCAATATAAATAGAGGCTTAGCGCCTCTTTTTATTGCCTAT
AGGCTTGTTCTTGTCATCTC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MKLNVATRVIGGFTVITLLLIVLGAASWFTNNQLKSSTQVLQELSLPALESSNLLSQTLSTQEKQILVAYHSKSEAEIPA
INSQFSAANQTFESELKKLAALVSNNSDLNAIIQNLDNQYAKFNTVSQELITTHETALVTTKEISSKYDGIEITVDDNAS
LLLDLIDLEMSEDVVEQEIAATASNLELSFSSIVSTSFDLIASTDKSKFDTISKELDYIVSDTKSKVDYVTNHWEGVVDT
ELINELNAEASKVFSMVKGNNSLIVLKQKELDLNQAAVGLLTDVERAATNVNQQMKTLTTNIESISREISSDAIANIDSA
SMRTVLLMMVAIIVAVVVSIAVVRPLTRSLEKVNHALNVLASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRNLIQGILD
RSDQLAAAAEETSAITAQTTVGIQEQKSQVDQVATATTQLSSSAQQVTASADEALSQIKAADDESQHMRLIADENKRTIL
ALADEVSKASIVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQ
QMIEVLQQGTQEAVAVMDLGRTQASSCVEKTEQANNALESISDAVHRAHDSGTHIAHAAQEQNLVSQQVSEKLEHIAAIS
EETSTGAEQTAQSSHQVAQLAEELQASVKEFKV

Sequences:

>Translated_673_residues
MKLNVATRVIGGFTVITLLLIVLGAASWFTNNQLKSSTQVLQELSLPALESSNLLSQTLSTQEKQILVAYHSKSEAEIPA
INSQFSAANQTFESELKKLAALVSNNSDLNAIIQNLDNQYAKFNTVSQELITTHETALVTTKEISSKYDGIEITVDDNAS
LLLDLIDLEMSEDVVEQEIAATASNLELSFSSIVSTSFDLIASTDKSKFDTISKELDYIVSDTKSKVDYVTNHWEGVVDT
ELINELNAEASKVFSMVKGNNSLIVLKQKELDLNQAAVGLLTDVERAATNVNQQMKTLTTNIESISREISSDAIANIDSA
SMRTVLLMMVAIIVAVVVSIAVVRPLTRSLEKVNHALNVLASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRNLIQGILD
RSDQLAAAAEETSAITAQTTVGIQEQKSQVDQVATATTQLSSSAQQVTASADEALSQIKAADDESQHMRLIADENKRTIL
ALADEVSKASIVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQ
QMIEVLQQGTQEAVAVMDLGRTQASSCVEKTEQANNALESISDAVHRAHDSGTHIAHAAQEQNLVSQQVSEKLEHIAAIS
EETSTGAEQTAQSSHQVAQLAEELQASVKEFKV
>Mature_673_residues
MKLNVATRVIGGFTVITLLLIVLGAASWFTNNQLKSSTQVLQELSLPALESSNLLSQTLSTQEKQILVAYHSKSEAEIPA
INSQFSAANQTFESELKKLAALVSNNSDLNAIIQNLDNQYAKFNTVSQELITTHETALVTTKEISSKYDGIEITVDDNAS
LLLDLIDLEMSEDVVEQEIAATASNLELSFSSIVSTSFDLIASTDKSKFDTISKELDYIVSDTKSKVDYVTNHWEGVVDT
ELINELNAEASKVFSMVKGNNSLIVLKQKELDLNQAAVGLLTDVERAATNVNQQMKTLTTNIESISREISSDAIANIDSA
SMRTVLLMMVAIIVAVVVSIAVVRPLTRSLEKVNHALNVLASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRNLIQGILD
RSDQLAAAAEETSAITAQTTVGIQEQKSQVDQVATATTQLSSSAQQVTASADEALSQIKAADDESQHMRLIADENKRTIL
ALADEVSKASIVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQ
QMIEVLQQGTQEAVAVMDLGRTQASSCVEKTEQANNALESISDAVHRAHDSGTHIAHAAQEQNLVSQQVSEKLEHIAAIS
EETSTGAEQTAQSSHQVAQLAEELQASVKEFKV

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=349, Percent_Identity=30.3724928366762, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1788195, Length=290, Percent_Identity=33.448275862069, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI2367378, Length=308, Percent_Identity=30.5194805194805, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1788194, Length=353, Percent_Identity=30.3116147308782, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1789453, Length=328, Percent_Identity=30.7926829268293, Blast_Score=106, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 72408; Mature: 72408

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNVATRVIGGFTVITLLLIVLGAASWFTNNQLKSSTQVLQELSLPALESSNLLSQTLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC
TQEKQILVAYHSKSEAEIPAINSQFSAANQTFESELKKLAALVSNNSDLNAIIQNLDNQY
CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AKFNTVSQELITTHETALVTTKEISSKYDGIEITVDDNASLLLDLIDLEMSEDVVEQEIA
HHHHHHHHHHHHHHHHHEEEHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ATASNLELSFSSIVSTSFDLIASTDKSKFDTISKELDYIVSDTKSKVDYVTNHWEGVVDT
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHH
ELINELNAEASKVFSMVKGNNSLIVLKQKELDLNQAAVGLLTDVERAATNVNQQMKTLTT
HHHHHHCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIESISREISSDAIANIDSASMRTVLLMMVAIIVAVVVSIAVVRPLTRSLEKVNHALNVL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRNLIQGILDRSDQLAAAAEETSAITAQTT
HCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEHHHH
VGIQEQKSQVDQVATATTQLSSSAQQVTASADEALSQIKAADDESQHMRLIADENKRTIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE
ALADEVSKASIVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV
EEHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCEEE
VADEVRSLASRTQDSTQEIQQMIEVLQQGTQEAVAVMDLGRTQASSCVEKTEQANNALES
EHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ISDAVHRAHDSGTHIAHAAQEQNLVSQQVSEKLEHIAAISEETSTGAEQTAQSSHQVAQL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AEELQASVKEFKV
HHHHHHHHHHHCC
>Mature Secondary Structure
MKLNVATRVIGGFTVITLLLIVLGAASWFTNNQLKSSTQVLQELSLPALESSNLLSQTLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHC
TQEKQILVAYHSKSEAEIPAINSQFSAANQTFESELKKLAALVSNNSDLNAIIQNLDNQY
CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AKFNTVSQELITTHETALVTTKEISSKYDGIEITVDDNASLLLDLIDLEMSEDVVEQEIA
HHHHHHHHHHHHHHHHHEEEHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ATASNLELSFSSIVSTSFDLIASTDKSKFDTISKELDYIVSDTKSKVDYVTNHWEGVVDT
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHH
ELINELNAEASKVFSMVKGNNSLIVLKQKELDLNQAAVGLLTDVERAATNVNQQMKTLTT
HHHHHHCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIESISREISSDAIANIDSASMRTVLLMMVAIIVAVVVSIAVVRPLTRSLEKVNHALNVL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGDLTHKLDDSGHDEFAKLSANCNKLVDSLRNLIQGILDRSDQLAAAAEETSAITAQTT
HCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEHHHH
VGIQEQKSQVDQVATATTQLSSSAQQVTASADEALSQIKAADDESQHMRLIADENKRTIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE
ALADEVSKASIVINKVHADSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV
EEHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCEEE
VADEVRSLASRTQDSTQEIQQMIEVLQQGTQEAVAVMDLGRTQASSCVEKTEQANNALES
EHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ISDAVHRAHDSGTHIAHAAQEQNLVSQQVSEKLEHIAAISEETSTGAEQTAQSSHQVAQL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AEELQASVKEFKV
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]