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The map label for this gene is ygdK [H]

Identifier: 167622758

GI number: 167622758

Start: 1020960

End: 1021406

Strand: Reverse

Name: ygdK [H]

Synonym: Shal_0818

Alternate gene names: 167622758

Gene position: 1021406-1020960 (Counterclockwise)

Preceding gene: 167622759

Following gene: 167622752

Centisome position: 19.54

GC content: 50.56

Gene sequence:

>447_bases
ATGAGTCAGCAAGTTCAACCCTCTGCAGAGCAATTTTTAGCATTAACCCTTGAAAGTGATACTGCGGCAACCGTGGAGTT
ATTTGAACAAGCAGGTAACTGGCAGGAGCGCTATCGTCAGATCATGCTATTAGGTAAGAGCCTGCCAAAGCTTGATGATA
ACCTGCGTGTTGAAAGCGCACAGGTTCGCGGCTGTGAGAGTAATGCCTGGCTGTATCACAGTGAAATTGACGGTAAACAC
TACTTTATCGCCGACAGTGACGCCCGCATCGTCAAGGGCTTAATTGCCCTGTTATTGATCGCCTGTAATGGCAAAACCAG
CAGCGAAATCACCGCGTTCAGCCCAGACAGTTATTTCACTCAGCTAGGGCTTCAGGGGCAGCTCAGCCCCTCACGCACCA
ATGGCTTGCTGGCACTCGCCAAGGCAATAAAGCTCGCGGCCGAATAA

Upstream 100 bases:

>100_bases
GCGTAGCCCGTCCTCGCAGCGAAGCGTCCTAGGTCCTAAGCCCTATAAAAAGCAAAGCACATTTTTATTTAATTATTTAT
CAATTCAAATTAGGTCGAGT

Downstream 100 bases:

>100_bases
TATCCCAAAAGAGCTATCTAGCTGAGCTAGCAATAAGCCCTATCAACAAGAGCTATAAAGATAGATTAGCGATGGTCTTT
TGAATCCCCACCACATCGGT

Product: Fe-S metabolism associated SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSQQVQPSAEQFLALTLESDTAATVELFEQAGNWQERYRQIMLLGKSLPKLDDNLRVESAQVRGCESNAWLYHSEIDGKH
YFIADSDARIVKGLIALLLIACNGKTSSEITAFSPDSYFTQLGLQGQLSPSRTNGLLALAKAIKLAAE

Sequences:

>Translated_148_residues
MSQQVQPSAEQFLALTLESDTAATVELFEQAGNWQERYRQIMLLGKSLPKLDDNLRVESAQVRGCESNAWLYHSEIDGKH
YFIADSDARIVKGLIALLLIACNGKTSSEITAFSPDSYFTQLGLQGQLSPSRTNGLLALAKAIKLAAE
>Mature_147_residues
SQQVQPSAEQFLALTLESDTAATVELFEQAGNWQERYRQIMLLGKSLPKLDDNLRVESAQVRGCESNAWLYHSEIDGKHY
FIADSDARIVKGLIALLLIACNGKTSSEITAFSPDSYFTQLGLQGQLSPSRTNGLLALAKAIKLAAE

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=111, Percent_Identity=48.6486486486487, Blast_Score=116, Evalue=5e-28,
Organism=Escherichia coli, GI1787969, Length=126, Percent_Identity=34.9206349206349, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16248; Mature: 16116

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQVQPSAEQFLALTLESDTAATVELFEQAGNWQERYRQIMLLGKSLPKLDDNLRVESA
CCCCCCCCCHHEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEHH
QVRGCESNAWLYHSEIDGKHYFIADSDARIVKGLIALLLIACNGKTSSEITAFSPDSYFT
HHCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHH
QLGLQGQLSPSRTNGLLALAKAIKLAAE
HCCCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQQVQPSAEQFLALTLESDTAATVELFEQAGNWQERYRQIMLLGKSLPKLDDNLRVESA
CCCCCCCCHHEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEHH
QVRGCESNAWLYHSEIDGKHYFIADSDARIVKGLIALLLIACNGKTSSEITAFSPDSYFT
HHCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHH
QLGLQGQLSPSRTNGLLALAKAIKLAAE
HCCCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]