| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622743
Identifier: 167622743
GI number: 167622743
Start: 998700
End: 1000124
Strand: Reverse
Name: 167622743
Synonym: Shal_0803
Alternate gene names: NA
Gene position: 1000124-998700 (Counterclockwise)
Preceding gene: 167622744
Following gene: 167622742
Centisome position: 19.13
GC content: 49.61
Gene sequence:
>1425_bases ATGCCTAAGTCTATTATTCTTTTTATTGCCCTTTTATTATCTTGCCTATCTCTGCCCAGTTTTGCCGCTACAGAAGCGAC AGCGACGAACAACATCTGGCATTACACCAATGCGCAGGGAGAGCTTAAGGTTAAACTGTATTTCTTCTGGTCTAAGACCT GTCCTCACTGCGCCGAGGCGCACCCTTTTATCGATAGCCTACCCGAGCGCTACCCCTGGATAGAGGTGGAAGATCATATG ATCACCGCCGCGAATACGATGGAAGTGTGGCAAAACGTCGCTAAACAGACGGGAACCGAAGCGCGCTCGGTGCCCTACTT TGCCAGTGGCGAAAAAGCCGTTGTCGGTTACAGCAGCCAAGCCGTTACCGGCGAGTTTTTAGTGCAACGATTAAAGTCCT ATTACGTTTCGCTTGGTGGCGTATTAGCACCAGAGGTCGAGGGCGACTACGCCACAGCTGCGCCTGTTTCAGGCGGCTTA TTTGAAACCTGTAGTGAAAGTAGCAGTAAAAGTGGTGAAGGGATTTGCGATTTGGGTTTAGATACCAGCAGCAAACTCGC TTCTTCTGATGTACAACCCGTAGAGTTACCACTGGTTGGTGTCGTTCACCCTGAGCAGATGTCGCTGCCATTACTAACGG TGGTACTCGCAGGCGTCGACGCCTTCAACCCTTGCGCTTTCTTCGTATTGCTATTCCTGCTCTCTATCATGGTTAACGCT AAGAGCCGCACTCGCATGCTGATTGTTGGCGGCATATTTGTGTTCTTCTCAGGCTTTATCTACTTCATTTTTATGAGCGC TTGGCTCAATATCTTCCAACTGCTTGGTGCAGGTAGCGATGGCGGCTGGATTATTCTCGGTGCGGGGATGTTAGCGCTGG TAGCAGGGGCGGTGAACATCAAAGATTACTTCTTTACCAAGGGAGAGGTCACCCTGTCGATGTCGGCCAAAAATCGAACT GGTTTGATTAAACGCATGGGTAAACTCACCAGCGCCAGCAGCATGACCGCCATGATAGCCGGTACTGTAGTGTTATCTAT CTTAGCCAACGCCTATGAGCTGCTATGCACCGCAGGCTTCCCGATGATCTATACCAGCGTATTGTCGATGCATGACTTAG AGACCTTCGAGCGCTATATGTATCTGGTGATGTACAACGTAGTTTATGTCATCCCACTCGCGGCTATCGTTATCGCCTTC AGTGTATCTCTAGGTAAACGCAAGCTCACCGAGAAAGAGGGTCAGACCCTTAAGCTGATGTCAGGCATCATGATGATGGG ACTCGGTGGCATGTTGGCAGTTGACCCAACAGCGCTGCAGAATGTGGCCTTAGCGATCGGCCTTATCTTAAGCTCTATCG TGTTGACGGTGATTATCACGCTTATTCGTAAGAGTATTGAGAAGGCTCAAGCAGCAAAGTCTTAA
Upstream 100 bases:
>100_bases TGCAAAAACAAAACATTAATTTAGCCATTCCTAAGCATTAAAGTAGAGTATTAGTAACAAACACGCTTAATTCATGGCTA ATACGTCTGCCGGAGTTCGC
Downstream 100 bases:
>100_bases TGTTAATTACTAAAGGCCTTAGCTTGCTGTAAAGCTGAGGCCTTCGTTTTCTAAAATAAGGACCTAGATCCTAGGACGCT TCGCTGCGAGGACGGGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MPKSIILFIALLLSCLSLPSFAATEATATNNIWHYTNAQGELKVKLYFFWSKTCPHCAEAHPFIDSLPERYPWIEVEDHM ITAANTMEVWQNVAKQTGTEARSVPYFASGEKAVVGYSSQAVTGEFLVQRLKSYYVSLGGVLAPEVEGDYATAAPVSGGL FETCSESSSKSGEGICDLGLDTSSKLASSDVQPVELPLVGVVHPEQMSLPLLTVVLAGVDAFNPCAFFVLLFLLSIMVNA KSRTRMLIVGGIFVFFSGFIYFIFMSAWLNIFQLLGAGSDGGWIILGAGMLALVAGAVNIKDYFFTKGEVTLSMSAKNRT GLIKRMGKLTSASSMTAMIAGTVVLSILANAYELLCTAGFPMIYTSVLSMHDLETFERYMYLVMYNVVYVIPLAAIVIAF SVSLGKRKLTEKEGQTLKLMSGIMMMGLGGMLAVDPTALQNVALAIGLILSSIVLTVIITLIRKSIEKAQAAKS
Sequences:
>Translated_474_residues MPKSIILFIALLLSCLSLPSFAATEATATNNIWHYTNAQGELKVKLYFFWSKTCPHCAEAHPFIDSLPERYPWIEVEDHM ITAANTMEVWQNVAKQTGTEARSVPYFASGEKAVVGYSSQAVTGEFLVQRLKSYYVSLGGVLAPEVEGDYATAAPVSGGL FETCSESSSKSGEGICDLGLDTSSKLASSDVQPVELPLVGVVHPEQMSLPLLTVVLAGVDAFNPCAFFVLLFLLSIMVNA KSRTRMLIVGGIFVFFSGFIYFIFMSAWLNIFQLLGAGSDGGWIILGAGMLALVAGAVNIKDYFFTKGEVTLSMSAKNRT GLIKRMGKLTSASSMTAMIAGTVVLSILANAYELLCTAGFPMIYTSVLSMHDLETFERYMYLVMYNVVYVIPLAAIVIAF SVSLGKRKLTEKEGQTLKLMSGIMMMGLGGMLAVDPTALQNVALAIGLILSSIVLTVIITLIRKSIEKAQAAKS >Mature_473_residues PKSIILFIALLLSCLSLPSFAATEATATNNIWHYTNAQGELKVKLYFFWSKTCPHCAEAHPFIDSLPERYPWIEVEDHMI TAANTMEVWQNVAKQTGTEARSVPYFASGEKAVVGYSSQAVTGEFLVQRLKSYYVSLGGVLAPEVEGDYATAAPVSGGLF ETCSESSSKSGEGICDLGLDTSSKLASSDVQPVELPLVGVVHPEQMSLPLLTVVLAGVDAFNPCAFFVLLFLLSIMVNAK SRTRMLIVGGIFVFFSGFIYFIFMSAWLNIFQLLGAGSDGGWIILGAGMLALVAGAVNIKDYFFTKGEVTLSMSAKNRTG LIKRMGKLTSASSMTAMIAGTVVLSILANAYELLCTAGFPMIYTSVLSMHDLETFERYMYLVMYNVVYVIPLAAIVIAFS VSLGKRKLTEKEGQTLKLMSGIMMMGLGGMLAVDPTALQNVALAIGLILSSIVLTVIITLIRKSIEKAQAAKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51133; Mature: 51002
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSIILFIALLLSCLSLPSFAATEATATNNIWHYTNAQGELKVKLYFFWSKTCPHCAEA CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCHHHC HPFIDSLPERYPWIEVEDHMITAANTMEVWQNVAKQTGTEARSVPYFASGEKAVVGYSSQ CCHHHHCCCCCCCEEECCCEEEHHHHHHHHHHHHHHCCCCHHCCCCEECCCEEEEECCCC AVTGEFLVQRLKSYYVSLGGVLAPEVEGDYATAAPVSGGLFETCSESSSKSGEGICDLGL CHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECC DTSSKLASSDVQPVELPLVGVVHPEQMSLPLLTVVLAGVDAFNPCAFFVLLFLLSIMVNA CCCHHHHCCCCCCEEECEEEEECCCHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC KSRTRMLIVGGIFVFFSGFIYFIFMSAWLNIFQLLGAGSDGGWIILGAGMLALVAGAVNI CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCH KDYFFTKGEVTLSMSAKNRTGLIKRMGKLTSASSMTAMIAGTVVLSILANAYELLCTAGF HHHEEECCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PMIYTSVLSMHDLETFERYMYLVMYNVVYVIPLAAIVIAFSVSLGKRKLTEKEGQTLKLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SGIMMMGLGGMLAVDPTALQNVALAIGLILSSIVLTVIITLIRKSIEKAQAAKS HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PKSIILFIALLLSCLSLPSFAATEATATNNIWHYTNAQGELKVKLYFFWSKTCPHCAEA CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCHHHC HPFIDSLPERYPWIEVEDHMITAANTMEVWQNVAKQTGTEARSVPYFASGEKAVVGYSSQ CCHHHHCCCCCCCEEECCCEEEHHHHHHHHHHHHHHCCCCHHCCCCEECCCEEEEECCCC AVTGEFLVQRLKSYYVSLGGVLAPEVEGDYATAAPVSGGLFETCSESSSKSGEGICDLGL CHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEECC DTSSKLASSDVQPVELPLVGVVHPEQMSLPLLTVVLAGVDAFNPCAFFVLLFLLSIMVNA CCCHHHHCCCCCCEEECEEEEECCCHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC KSRTRMLIVGGIFVFFSGFIYFIFMSAWLNIFQLLGAGSDGGWIILGAGMLALVAGAVNI CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCH KDYFFTKGEVTLSMSAKNRTGLIKRMGKLTSASSMTAMIAGTVVLSILANAYELLCTAGF HHHEEECCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PMIYTSVLSMHDLETFERYMYLVMYNVVYVIPLAAIVIAFSVSLGKRKLTEKEGQTLKLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH SGIMMMGLGGMLAVDPTALQNVALAIGLILSSIVLTVIITLIRKSIEKAQAAKS HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA