| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622744
Identifier: 167622744
GI number: 167622744
Start: 1000459
End: 1000875
Strand: Reverse
Name: 167622744
Synonym: Shal_0804
Alternate gene names: NA
Gene position: 1000875-1000459 (Counterclockwise)
Preceding gene: 167622747
Following gene: 167622743
Centisome position: 19.15
GC content: 38.85
Gene sequence:
>417_bases ATGAAGTGGATAGCCGCAGTTTGTTTACTATTTGCCACAAGCACGATGGCTCAATGTGATAATAAAACTCACATTATCGA TATTATTTATCCCAAAAATAGCTCTTATTTCTCAAGCCAGTACACATCTCAACTCGATGAGCTAACCAAAAGTACTCAAA TCAATACAGGCTATTTACTACTTGAATTCAAAGTGAATCAAACCCAAGCGACAGAAGAAACACGTAACTATAATAAGTGG CTAGCAGAAAGACGTATTGAAAGAGTAAAAACCTATCTTAATGATGTCGCTTACCCTGCGCCGATTATCACTAAAATATT AACCGCGAGTACCGACGAAAACCGTAATGTGAGCCTAGTGTGGTGTACAGATGAAGCCGAACAACCGCAGATCCAAATCG CCAGTAAAGATGAGTAA
Upstream 100 bases:
>100_bases GGTGATTGTATTTTCTCTAGTAATAGCATAAATTTTCGCACAATGGAGTAGCACTAAACCGCTCTTTAGGGTGATTTTAA GCTTAGCAAGGAAGTACGGT
Downstream 100 bases:
>100_bases TTCTACGGGTTAAGTTTACGTTCAACGTGTTAACCAGCATTACAGCTCAATAGCAGTAAAGAAAACTCAAACTCAAACTC AAGCAAAACGAAACCACAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 138; Mature: 138
Protein sequence:
>138_residues MKWIAAVCLLFATSTMAQCDNKTHIIDIIYPKNSSYFSSQYTSQLDELTKSTQINTGYLLLEFKVNQTQATEETRNYNKW LAERRIERVKTYLNDVAYPAPIITKILTASTDENRNVSLVWCTDEAEQPQIQIASKDE
Sequences:
>Translated_138_residues MKWIAAVCLLFATSTMAQCDNKTHIIDIIYPKNSSYFSSQYTSQLDELTKSTQINTGYLLLEFKVNQTQATEETRNYNKW LAERRIERVKTYLNDVAYPAPIITKILTASTDENRNVSLVWCTDEAEQPQIQIASKDE >Mature_138_residues MKWIAAVCLLFATSTMAQCDNKTHIIDIIYPKNSSYFSSQYTSQLDELTKSTQINTGYLLLEFKVNQTQATEETRNYNKW LAERRIERVKTYLNDVAYPAPIITKILTASTDENRNVSLVWCTDEAEQPQIQIASKDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15893; Mature: 15893
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWIAAVCLLFATSTMAQCDNKTHIIDIIYPKNSSYFSSQYTSQLDELTKSTQINTGYLL CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEE LEFKVNQTQATEETRNYNKWLAERRIERVKTYLNDVAYPAPIITKILTASTDENRNVSLV EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE WCTDEAEQPQIQIASKDE EECCCCCCCEEEEECCCC >Mature Secondary Structure MKWIAAVCLLFATSTMAQCDNKTHIIDIIYPKNSSYFSSQYTSQLDELTKSTQINTGYLL CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEE LEFKVNQTQATEETRNYNKWLAERRIERVKTYLNDVAYPAPIITKILTASTDENRNVSLV EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE WCTDEAEQPQIQIASKDE EECCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA