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The map label for this gene is ligT [C]

Identifier: 167622699

GI number: 167622699

Start: 939265

End: 939798

Strand: Reverse

Name: ligT [C]

Synonym: Shal_0759

Alternate gene names: 167622699

Gene position: 939798-939265 (Counterclockwise)

Preceding gene: 167622703

Following gene: 167622698

Centisome position: 17.98

GC content: 47.75

Gene sequence:

>534_bases
ATGCCTAACAATACAAAGAGCCAAACTAAGCGTGTCTTCTTAGGTTTCTCTCTCGATAGTCTTCAAACCCAGAGCATCAT
CGCGATTCAGGGCCAACTTCCCAATAGCGTCCGCTTAGTACCTAGTGCTAACCTGCATATGACACTCGCCTTTTTAGGTG
CCGCCACCCCAGCTCAAATAAATGCCATTATCGATAGTGTCGATAAGATGAGTCGACCTAAGTTTAGCGTTATGCTCGAT
AGCTTAAGTCATTGGGAAAAGCCAAAAATTCTCTGTCTTAGAGGTGATGCGACCGATCCAGGCTTACGCCAATTCGCACA
GGATGCGCAGTGCATTGCAGCAGAACTTGGCTTACATTGCAGCGAGTATCACTATAACCCCCATATCACGCTTGCACGCA
AGACTAAGGCAGAAGTAAGAGGAGTCGACTACCCGCCCTTAATCCTAGCCCCGTCGCAACTGCAGCTGTTTGAGTCATAT
TCCGGCCTTAATGGGGTCGAATATCCAACACTTCACTGTTGGCAACTCGCTTAA

Upstream 100 bases:

>100_bases
ACGAATGGACTGGTTCTGATTGCCCACTAGTGTACTCTAAAAGGGGCTATAGACTAAACTGCTAGTATTATCGCAGCATT
AAAAATTCAGGAAACCTTGG

Downstream 100 bases:

>100_bases
GCCTTTGTCATCGATTCAATCTGAGCTACCCTATGTAGCATTAAGTTCTAGCTATTTGAGATAACCATGGAAACGACCGA
AATAACTAAAGCACAACTAC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; 2\-5\' RNA Ligase; 2 5 RNA Ligase; Phosphoesterase HXTX

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MPNNTKSQTKRVFLGFSLDSLQTQSIIAIQGQLPNSVRLVPSANLHMTLAFLGAATPAQINAIIDSVDKMSRPKFSVMLD
SLSHWEKPKILCLRGDATDPGLRQFAQDAQCIAAELGLHCSEYHYNPHITLARKTKAEVRGVDYPPLILAPSQLQLFESY
SGLNGVEYPTLHCWQLA

Sequences:

>Translated_177_residues
MPNNTKSQTKRVFLGFSLDSLQTQSIIAIQGQLPNSVRLVPSANLHMTLAFLGAATPAQINAIIDSVDKMSRPKFSVMLD
SLSHWEKPKILCLRGDATDPGLRQFAQDAQCIAAELGLHCSEYHYNPHITLARKTKAEVRGVDYPPLILAPSQLQLFESY
SGLNGVEYPTLHCWQLA
>Mature_176_residues
PNNTKSQTKRVFLGFSLDSLQTQSIIAIQGQLPNSVRLVPSANLHMTLAFLGAATPAQINAIIDSVDKMSRPKFSVMLDS
LSHWEKPKILCLRGDATDPGLRQFAQDAQCIAAELGLHCSEYHYNPHITLARKTKAEVRGVDYPPLILAPSQLQLFESYS
GLNGVEYPTLHCWQLA

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19560; Mature: 19429

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNNTKSQTKRVFLGFSLDSLQTQSIIAIQGQLPNSVRLVPSANLHMTLAFLGAATPAQI
CCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEEECCCCCHHH
NAIIDSVDKMSRPKFSVMLDSLSHWEKPKILCLRGDATDPGLRQFAQDAQCIAAELGLHC
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE
SEYHYNPHITLARKTKAEVRGVDYPPLILAPSQLQLFESYSGLNGVEYPTLHCWQLA
EEEECCCCEEEEECCHHHHCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
PNNTKSQTKRVFLGFSLDSLQTQSIIAIQGQLPNSVRLVPSANLHMTLAFLGAATPAQI
CCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEEECCCCCHHH
NAIIDSVDKMSRPKFSVMLDSLSHWEKPKILCLRGDATDPGLRQFAQDAQCIAAELGLHC
HHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE
SEYHYNPHITLARKTKAEVRGVDYPPLILAPSQLQLFESYSGLNGVEYPTLHCWQLA
EEEECCCCEEEEECCHHHHCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA