| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622688
Identifier: 167622688
GI number: 167622688
Start: 929052
End: 929570
Strand: Reverse
Name: 167622688
Synonym: Shal_0748
Alternate gene names: NA
Gene position: 929570-929052 (Counterclockwise)
Preceding gene: 167622689
Following gene: 167622682
Centisome position: 17.78
GC content: 39.31
Gene sequence:
>519_bases ATGGCGAGAGTTATTTTCACACTGGTTTGCCTTATGCTAACAGGCACAGCACAGGCAAATAGTATTTTTAAGTGCATAAA AGACGATAAAATCGTCTTTAGTCAGCTGTCATGTCCAAAAGAATTCCGCCAGCATAAAATCGAGTACCAACTGGGGATCA CTACCGAAATCGATTCAGATAAACGCATTAAAACCCTAGATCCGCTGCAAGCTTTACTCAACAAGAAAACTATCTCTAAA GAACGTTTACTCCAACTGCTGGATAGTGAAGTGTATCGCCTACGCCAAGAAAATAGTTACTACGAAATACTCAGAGCGAG TGAGTTACAGAAACTTGAACGCAATCGTTATTGGCAGAAGAAAGAGACTGACGATCCTGAGTATATTGAATCGCTTAAAG AGATGAACCAACACTTCGACAATCTTATCGCCAATAATACCAAGGTTATAAATTTATTAGGCGATCACAAACAACAAATT GAACAGGAATCCCCCTCTATTCAATTGATAAGTCGCTAG
Upstream 100 bases:
>100_bases ATTGTGGAACTATTGTTAATTTAAAGCGATAACCTCAAAATTGGCATAGCTTGTACCTGTCATTAACTAAGCACCAAGCT CGATAAGGATATTTAGCCGG
Downstream 100 bases:
>100_bases CCACAGCTTATGAGTTGCTCTAGCCTTTGATAGCTGCAACTCCTTCAGCTAAATCCGCCTGAAATATTTAATAGTCTGCC CAAAACAGTCTATGGCTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MARVIFTLVCLMLTGTAQANSIFKCIKDDKIVFSQLSCPKEFRQHKIEYQLGITTEIDSDKRIKTLDPLQALLNKKTISK ERLLQLLDSEVYRLRQENSYYEILRASELQKLERNRYWQKKETDDPEYIESLKEMNQHFDNLIANNTKVINLLGDHKQQI EQESPSIQLISR
Sequences:
>Translated_172_residues MARVIFTLVCLMLTGTAQANSIFKCIKDDKIVFSQLSCPKEFRQHKIEYQLGITTEIDSDKRIKTLDPLQALLNKKTISK ERLLQLLDSEVYRLRQENSYYEILRASELQKLERNRYWQKKETDDPEYIESLKEMNQHFDNLIANNTKVINLLGDHKQQI EQESPSIQLISR >Mature_171_residues ARVIFTLVCLMLTGTAQANSIFKCIKDDKIVFSQLSCPKEFRQHKIEYQLGITTEIDSDKRIKTLDPLQALLNKKTISKE RLLQLLDSEVYRLRQENSYYEILRASELQKLERNRYWQKKETDDPEYIESLKEMNQHFDNLIANNTKVINLLGDHKQQIE QESPSIQLISR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20292; Mature: 20160
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVIFTLVCLMLTGTAQANSIFKCIKDDKIVFSQLSCPKEFRQHKIEYQLGITTEIDSD CHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHEECCEEECCCC KRIKTLDPLQALLNKKTISKERLLQLLDSEVYRLRQENSYYEILRASELQKLERNRYWQK CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC KETDDPEYIESLKEMNQHFDNLIANNTKVINLLGDHKQQIEQESPSIQLISR CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCEEECCC >Mature Secondary Structure ARVIFTLVCLMLTGTAQANSIFKCIKDDKIVFSQLSCPKEFRQHKIEYQLGITTEIDSD HHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHEECCEEECCCC KRIKTLDPLQALLNKKTISKERLLQLLDSEVYRLRQENSYYEILRASELQKLERNRYWQK CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC KETDDPEYIESLKEMNQHFDNLIANNTKVINLLGDHKQQIEQESPSIQLISR CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA