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The map label for this gene is yjdF [H]

Identifier: 167622664

GI number: 167622664

Start: 900217

End: 900852

Strand: Direct

Name: yjdF [H]

Synonym: Shal_0724

Alternate gene names: 167622664

Gene position: 900217-900852 (Clockwise)

Preceding gene: 167622661

Following gene: 167622665

Centisome position: 17.22

GC content: 45.44

Gene sequence:

>636_bases
ATGGTATATGAGGGCGAAATTTTGAATAAAAGTGCTGTATGGCTAGTGACATTCTTCGCCGTATTAATCTGGTCAGGGAT
TAATCCTAAGGATCAATTTACCTGGTTTTTAGAGGTCGTACCGGCCTTAATCGCCCTGCCTATTCTGATCTACACCCGCA
ATAGCTTCACATTAACGAATTTGGCCTACGGCTTGATCTTGGTTCACTGCATTATTTTGATGGTCGGTGGGCATTACACT
TATGCCGAGGTGCCGCTGTTTGATTGGATTAGCGATTGGACGGGCGGGGAGCGTAATAACTACGACAAGGTCGGGCATTT
TGCCCAAGGTTTTATTCCCGCTATTTTGGCGCGTGAAGTGTTTATACGCCTCAGTGTTGTTAAATTAGGTGCTTGGTGTA
ACTTTCTTGCAGTCTGTTTTACTTTAGCATTCTCTGCTTTTTATGAGCTAATAGAGTGGTGGGTTGCCGAGTTGACAGGT
GAGGATGCCGAGGCGTTTTTAGGCACGCAAGGATACGTGTGGGACACCCAGTCCGATATGGCAATGGCGCTGGTGGGAGC
AATATCTGCCATTGTATTGCTCAGTCGTGTACATGATAAGCAGTTACGAGTAAAACTAGCTGAAGACAAATTATGA

Upstream 100 bases:

>100_bases
AATTTACTTCGAAAGCGTAACAGAGGTAACAAAGTAGCACTTTTTATGGTGGCTGTGGAGGGCTAGATGGCTAAAGTGTT
TATTCTTAATTTAGAACAAT

Downstream 100 bases:

>100_bases
TCGACCTGCCTTGCGCCTAGTACCTATTTATACTAGGTCCTTCTTTTAAAGTAGGTCGGCATTTATGCCGTCACAGGTTA
GAAGCAGGTTCTAGGAAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MVYEGEILNKSAVWLVTFFAVLIWSGINPKDQFTWFLEVVPALIALPILIYTRNSFTLTNLAYGLILVHCIILMVGGHYT
YAEVPLFDWISDWTGGERNNYDKVGHFAQGFIPAILAREVFIRLSVVKLGAWCNFLAVCFTLAFSAFYELIEWWVAELTG
EDAEAFLGTQGYVWDTQSDMAMALVGAISAIVLLSRVHDKQLRVKLAEDKL

Sequences:

>Translated_211_residues
MVYEGEILNKSAVWLVTFFAVLIWSGINPKDQFTWFLEVVPALIALPILIYTRNSFTLTNLAYGLILVHCIILMVGGHYT
YAEVPLFDWISDWTGGERNNYDKVGHFAQGFIPAILAREVFIRLSVVKLGAWCNFLAVCFTLAFSAFYELIEWWVAELTG
EDAEAFLGTQGYVWDTQSDMAMALVGAISAIVLLSRVHDKQLRVKLAEDKL
>Mature_211_residues
MVYEGEILNKSAVWLVTFFAVLIWSGINPKDQFTWFLEVVPALIALPILIYTRNSFTLTNLAYGLILVHCIILMVGGHYT
YAEVPLFDWISDWTGGERNNYDKVGHFAQGFIPAILAREVFIRLSVVKLGAWCNFLAVCFTLAFSAFYELIEWWVAELTG
EDAEAFLGTQGYVWDTQSDMAMALVGAISAIVLLSRVHDKQLRVKLAEDKL

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=197, Percent_Identity=49.746192893401, Blast_Score=199, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 23823; Mature: 23823

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYEGEILNKSAVWLVTFFAVLIWSGINPKDQFTWFLEVVPALIALPILIYTRNSFTLTN
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LAYGLILVHCIILMVGGHYTYAEVPLFDWISDWTGGERNNYDKVGHFAQGFIPAILAREV
HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FIRLSVVKLGAWCNFLAVCFTLAFSAFYELIEWWVAELTGEDAEAFLGTQGYVWDTQSDM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCHHH
AMALVGAISAIVLLSRVHDKQLRVKLAEDKL
HHHHHHHHHHHHHHHHHHHHHHHEEHHCCCC
>Mature Secondary Structure
MVYEGEILNKSAVWLVTFFAVLIWSGINPKDQFTWFLEVVPALIALPILIYTRNSFTLTN
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LAYGLILVHCIILMVGGHYTYAEVPLFDWISDWTGGERNNYDKVGHFAQGFIPAILAREV
HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FIRLSVVKLGAWCNFLAVCFTLAFSAFYELIEWWVAELTGEDAEAFLGTQGYVWDTQSDM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCHHH
AMALVGAISAIVLLSRVHDKQLRVKLAEDKL
HHHHHHHHHHHHHHHHHHHHHHHEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]