| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622657
Identifier: 167622657
GI number: 167622657
Start: 886374
End: 887474
Strand: Reverse
Name: 167622657
Synonym: Shal_0717
Alternate gene names: NA
Gene position: 887474-886374 (Counterclockwise)
Preceding gene: 167622658
Following gene: 167622656
Centisome position: 16.98
GC content: 48.77
Gene sequence:
>1101_bases ATGAAAACGTTTTACCGTTTAGCTCTACTATTTCTGCTTAGCGGCTGCGACTCTGAACCAAACTCGTTATCTACTGGTAT GGGACAACTGCTCGATGGCAATATTCAGGGTTACACAGCCGTAACTGAGGGCAAGCAGCTATCGTTTCCTCGAGATCACC AGGCGCATGATGACTTTCGGCAAGAGTGGTGGTACTTAACTGCCAATCTAACCACTGAGACTGGTGAGCATCTGGGTTTA CAATGGACTCAGTTTCGTATTGCGCTTGCTCCGCCCGCTCCAGATACAGCTAATGGCAATGGCCTGCCATCTAGTTGGCA AACAAAGCAGCTATATATGTCGCATACTGCGCTCACCAGCAAGCAACAGCATTTAGCCGAGGAAAAGTGGTCTCGGGGCA ACCCACACTTTGCCGGCACCCAAGTGTCGCCACTTGCGATCCAACAAGACAATTGGCAATGGCGAAGCAGCAATGATGAG TTGTTTCCAGCCACTTTGTCAGTCGCAACCGACGAGTTCAGTTACCAGCTCAAGCTCGAAAGCCAGTCACCTTTGCAACT ACAGGGCGATAACGGCTACAGTCGTAAAAATGCCAGCGGCACAGTGGCGAGTTACTACTACAGCCAACCTTTTATCAGGG TAAGTGGCACCATCGAACGAGATGGGAAAACAATGATGGTAACCGGAGATGGCTGGCTAGATAGAGAGTGGAGCTCACAA TTTCTTGCTAAGACTCAGCAGGGCTGGGATTGGTTTGCCCTAAGGCTAGATGATGGCTCTGCGCTGATGCTGTTTCAACT CAGGGATAATAGTGATCCTAAACAACATTTTTATAGTGGTAGACGTATGTACCCCGATGGGCGCGGTAACAACATTAATC ATCAGCAGATTTCCATGACTGCAACCGCTTGGCAGCAAACACAGTCAGGCCACTATCCTGTAAGTTGGCAGATCGCCATT CCCTCAGAAGATATTCAACTGACCACTCAAGCCCTCAATGCCAATTCAACCATGCCGCTGTCTATCCCTTATTGGGAGGG GCCCATCAAAATTAACGGTAGTCACAATGGCTTAGGCTATATGGAACTCACAGGATATTAA
Upstream 100 bases:
>100_bases TGTTAGTCATCGCCATGATCGTCAGCGCCGTCGCGGTGATCTTGCCGCTGCTGTGGCAGACCCGGCGTCCATTGAACAGT CGCTTGCAACAGGAGGCGCT
Downstream 100 bases:
>100_bases TCAATATTTAATAACATATTTACCTAAACCCTGATATATTCCCAATTCGTTTACACAGCCAAAACCAAGTGTAAATGAAA ATCATTATCAATAATTAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Hydrolase; Hydrolase; Lipoprotein; ABC Transporter Type C Secreted Protein; Hydroxyneurosporene Synthase; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MKTFYRLALLFLLSGCDSEPNSLSTGMGQLLDGNIQGYTAVTEGKQLSFPRDHQAHDDFRQEWWYLTANLTTETGEHLGL QWTQFRIALAPPAPDTANGNGLPSSWQTKQLYMSHTALTSKQQHLAEEKWSRGNPHFAGTQVSPLAIQQDNWQWRSSNDE LFPATLSVATDEFSYQLKLESQSPLQLQGDNGYSRKNASGTVASYYYSQPFIRVSGTIERDGKTMMVTGDGWLDREWSSQ FLAKTQQGWDWFALRLDDGSALMLFQLRDNSDPKQHFYSGRRMYPDGRGNNINHQQISMTATAWQQTQSGHYPVSWQIAI PSEDIQLTTQALNANSTMPLSIPYWEGPIKINGSHNGLGYMELTGY
Sequences:
>Translated_366_residues MKTFYRLALLFLLSGCDSEPNSLSTGMGQLLDGNIQGYTAVTEGKQLSFPRDHQAHDDFRQEWWYLTANLTTETGEHLGL QWTQFRIALAPPAPDTANGNGLPSSWQTKQLYMSHTALTSKQQHLAEEKWSRGNPHFAGTQVSPLAIQQDNWQWRSSNDE LFPATLSVATDEFSYQLKLESQSPLQLQGDNGYSRKNASGTVASYYYSQPFIRVSGTIERDGKTMMVTGDGWLDREWSSQ FLAKTQQGWDWFALRLDDGSALMLFQLRDNSDPKQHFYSGRRMYPDGRGNNINHQQISMTATAWQQTQSGHYPVSWQIAI PSEDIQLTTQALNANSTMPLSIPYWEGPIKINGSHNGLGYMELTGY >Mature_366_residues MKTFYRLALLFLLSGCDSEPNSLSTGMGQLLDGNIQGYTAVTEGKQLSFPRDHQAHDDFRQEWWYLTANLTTETGEHLGL QWTQFRIALAPPAPDTANGNGLPSSWQTKQLYMSHTALTSKQQHLAEEKWSRGNPHFAGTQVSPLAIQQDNWQWRSSNDE LFPATLSVATDEFSYQLKLESQSPLQLQGDNGYSRKNASGTVASYYYSQPFIRVSGTIERDGKTMMVTGDGWLDREWSSQ FLAKTQQGWDWFALRLDDGSALMLFQLRDNSDPKQHFYSGRRMYPDGRGNNINHQQISMTATAWQQTQSGHYPVSWQIAI PSEDIQLTTQALNANSTMPLSIPYWEGPIKINGSHNGLGYMELTGY
Specific function: Unknown
COG id: COG5621
COG function: function code R; Predicted secreted hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41355; Mature: 41355
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTFYRLALLFLLSGCDSEPNSLSTGMGQLLDGNIQGYTAVTEGKQLSFPRDHQAHDDFR CCHHHHHHHHHHHHCCCCCCCHHHHCCHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHC QEWWYLTANLTTETGEHLGLQWTQFRIALAPPAPDTANGNGLPSSWQTKQLYMSHTALTS CCEEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH KQQHLAEEKWSRGNPHFAGTQVSPLAIQQDNWQWRSSNDELFPATLSVATDEFSYQLKLE HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEEEEEEECCEEEEEEEC SQSPLQLQGDNGYSRKNASGTVASYYYSQPFIRVSGTIERDGKTMMVTGDGWLDREWSSQ CCCCEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEECCCCCCCHHHHH FLAKTQQGWDWFALRLDDGSALMLFQLRDNSDPKQHFYSGRRMYPDGRGNNINHQQISMT HHHHHCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHCCCCEECCCCCCCCCCCEEEEEE ATAWQQTQSGHYPVSWQIAIPSEDIQLTTQALNANSTMPLSIPYWEGPIKINGSHNGLGY EHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCCCEEECCCCCCEEE MELTGY EEEECC >Mature Secondary Structure MKTFYRLALLFLLSGCDSEPNSLSTGMGQLLDGNIQGYTAVTEGKQLSFPRDHQAHDDFR CCHHHHHHHHHHHHCCCCCCCHHHHCCHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHC QEWWYLTANLTTETGEHLGLQWTQFRIALAPPAPDTANGNGLPSSWQTKQLYMSHTALTS CCEEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH KQQHLAEEKWSRGNPHFAGTQVSPLAIQQDNWQWRSSNDELFPATLSVATDEFSYQLKLE HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEEEEEEECCEEEEEEEC SQSPLQLQGDNGYSRKNASGTVASYYYSQPFIRVSGTIERDGKTMMVTGDGWLDREWSSQ CCCCEEEECCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEECCCCCCCHHHHH FLAKTQQGWDWFALRLDDGSALMLFQLRDNSDPKQHFYSGRRMYPDGRGNNINHQQISMT HHHHHCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHCCCCEECCCCCCCCCCCEEEEEE ATAWQQTQSGHYPVSWQIAIPSEDIQLTTQALNANSTMPLSIPYWEGPIKINGSHNGLGY EHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEEEECCCCCCEEECCCCCCEEE MELTGY EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA