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The map label for this gene is ywbI [H]

Identifier: 167622649

GI number: 167622649

Start: 877924

End: 878826

Strand: Reverse

Name: ywbI [H]

Synonym: Shal_0709

Alternate gene names: 167622649

Gene position: 878826-877924 (Counterclockwise)

Preceding gene: 167622650

Following gene: 167622648

Centisome position: 16.81

GC content: 45.63

Gene sequence:

>903_bases
ATGAACATACAGATTAAGAGCTTGCACTGCTTTGTGACCTTACTAGAGGTTGGTAACTACACCCGCGCTGCAGAAAAATT
ACACCTTACTCAGCCGACACTGAGCAAGATGATCCAGCGCTTAGAAGAAAATTTAGAGCAACCGCTATTGATTAGAAATA
ATCAAAAAGTGATCGCAACTGAAGCCGGACGAATGCTTGCCAATAGCGCTCAACAAATAGTTGGACAGTGGCATCGATTA
CAAGAAGAGTTGAATAGCTTGAATGGCCTGCAAACAGGACAGTTACGATTGGGTGTCTGCCCCATGATGGGTGAGATGAT
TATTAGTCTGCTCAGCGAATATCGTAAACGCTTCCCAAAAATTGAGGTCAGCATCGTCGAATTAGGCGGCTTCGGTGCAG
AGCAAGCACTACTCAATGACACCTTAGATCTCACCTTTACCGCGCTTCCTACTACACACTCGCAGGAGTTTTATAGCCAT
AACCTTAAGGGTTACCCTCTATTAGCATGCATACCCAACGGCCATAAACTTGAAAAGTCAGAGGCTATTACATGGGCCGC
TATTGAGCCTCACCCCTTTATTCTCTATAACGATGATTTTTCTCTTACAAAACTTATCCATAGATTAAGCCGCAAGGCCA
ATGTGGAACTCAATATTGCGGCCCAAAGCGGCCAATGGGATTTTATTGCCGCTATGGTAGAGGCCCAGATGGGAGTCGCC
ATCTTGCCAAAGCCTATCTGCGACAAGGTAACCTCAGACAAGCTAGTTTATCGGCCATTGTCGCCGAACTTAACCTGGGA
TCTGGCGCTGATTTGGCGTAAAAACTTACCACTAACGCCTGCAGCAGAAAGCTTCATCAACTTAAGCCGCGAGCTAAGTC
CTGATACCCCTCTGTATAAATAA

Upstream 100 bases:

>100_bases
TTGCGATAAAATAGTCGAAATAGTGTGCTTGCGGTCAAAGTAATCCTTATCCTACTATTAGTAAAATGAATAATAACCAT
CAACTAAATTCCATTTAAGC

Downstream 100 bases:

>100_bases
TTTTGACTCCTTAGATCCTTTAATCCTCGTCACAACCAAGCCTTGATGCGATCAAGCCCCAAACTTTATTTCTTTACCTA
TAATTATTGACTATAGAACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNIQIKSLHCFVTLLEVGNYTRAAEKLHLTQPTLSKMIQRLEENLEQPLLIRNNQKVIATEAGRMLANSAQQIVGQWHRL
QEELNSLNGLQTGQLRLGVCPMMGEMIISLLSEYRKRFPKIEVSIVELGGFGAEQALLNDTLDLTFTALPTTHSQEFYSH
NLKGYPLLACIPNGHKLEKSEAITWAAIEPHPFILYNDDFSLTKLIHRLSRKANVELNIAAQSGQWDFIAAMVEAQMGVA
ILPKPICDKVTSDKLVYRPLSPNLTWDLALIWRKNLPLTPAAESFINLSRELSPDTPLYK

Sequences:

>Translated_300_residues
MNIQIKSLHCFVTLLEVGNYTRAAEKLHLTQPTLSKMIQRLEENLEQPLLIRNNQKVIATEAGRMLANSAQQIVGQWHRL
QEELNSLNGLQTGQLRLGVCPMMGEMIISLLSEYRKRFPKIEVSIVELGGFGAEQALLNDTLDLTFTALPTTHSQEFYSH
NLKGYPLLACIPNGHKLEKSEAITWAAIEPHPFILYNDDFSLTKLIHRLSRKANVELNIAAQSGQWDFIAAMVEAQMGVA
ILPKPICDKVTSDKLVYRPLSPNLTWDLALIWRKNLPLTPAAESFINLSRELSPDTPLYK
>Mature_300_residues
MNIQIKSLHCFVTLLEVGNYTRAAEKLHLTQPTLSKMIQRLEENLEQPLLIRNNQKVIATEAGRMLANSAQQIVGQWHRL
QEELNSLNGLQTGQLRLGVCPMMGEMIISLLSEYRKRFPKIEVSIVELGGFGAEQALLNDTLDLTFTALPTTHSQEFYSH
NLKGYPLLACIPNGHKLEKSEAITWAAIEPHPFILYNDDFSLTKLIHRLSRKANVELNIAAQSGQWDFIAAMVEAQMGVA
ILPKPICDKVTSDKLVYRPLSPNLTWDLALIWRKNLPLTPAAESFINLSRELSPDTPLYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=28.2312925170068, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=26.9896193771626, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1788887, Length=294, Percent_Identity=27.2108843537415, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1790399, Length=291, Percent_Identity=25.4295532646048, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=24.8275862068966, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=27.4131274131274, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=21.5753424657534, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=311, Percent_Identity=25.4019292604502, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789639, Length=168, Percent_Identity=25.5952380952381, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=26.6932270916335, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367136, Length=289, Percent_Identity=21.1072664359862, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=295, Percent_Identity=25.4237288135593, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789506, Length=292, Percent_Identity=21.5753424657534, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=285, Percent_Identity=21.7543859649123, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33823; Mature: 33823

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS50931 HTH_LYSR ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQIKSLHCFVTLLEVGNYTRAAEKLHLTQPTLSKMIQRLEENLEQPLLIRNNQKVIAT
CCEEEEHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEE
EAGRMLANSAQQIVGQWHRLQEELNSLNGLQTGQLRLGVCPMMGEMIISLLSEYRKRFPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCC
IEVSIVELGGFGAEQALLNDTLDLTFTALPTTHSQEFYSHNLKGYPLLACIPNGHKLEKS
EEEEEEEECCCCHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCEECCC
EAITWAAIEPHPFILYNDDFSLTKLIHRLSRKANVELNIAAQSGQWDFIAAMVEAQMGVA
CCEEEEEECCCEEEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCEE
ILPKPICDKVTSDKLVYRPLSPNLTWDLALIWRKNLPLTPAAESFINLSRELSPDTPLYK
ECCCHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNIQIKSLHCFVTLLEVGNYTRAAEKLHLTQPTLSKMIQRLEENLEQPLLIRNNQKVIAT
CCEEEEHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEE
EAGRMLANSAQQIVGQWHRLQEELNSLNGLQTGQLRLGVCPMMGEMIISLLSEYRKRFPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCC
IEVSIVELGGFGAEQALLNDTLDLTFTALPTTHSQEFYSHNLKGYPLLACIPNGHKLEKS
EEEEEEEECCCCHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCEEEEECCCCCEECCC
EAITWAAIEPHPFILYNDDFSLTKLIHRLSRKANVELNIAAQSGQWDFIAAMVEAQMGVA
CCEEEEEECCCEEEEECCCCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCEE
ILPKPICDKVTSDKLVYRPLSPNLTWDLALIWRKNLPLTPAAESFINLSRELSPDTPLYK
ECCCHHHHHCCCCCEEEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]