| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is phoB [H]
Identifier: 167622639
GI number: 167622639
Start: 861775
End: 863085
Strand: Reverse
Name: phoB [H]
Synonym: Shal_0699
Alternate gene names: 167622639
Gene position: 863085-861775 (Counterclockwise)
Preceding gene: 167622640
Following gene: 167622638
Centisome position: 16.51
GC content: 50.04
Gene sequence:
>1311_bases ATGAACTTAACAAAAACACTCACTTGGACCATTAGCGCCCTAGTTTTGTTGCCCCTATTTGCAGCGGCTAACGTCGATAT TCACGATGCGCCATCACGCCCTAAGAATATGATTATTATGATAGGTGATGGCATGGGCCCGGCGTACACCAGTGCCTATC GTTACTACCAAGATAATCCTGATACCGAAGAGATAGAGCAAACTGTTTTTGATAGGTTACTTGTCGGCATGGCATCGACT TATCCAGCAAGGAAAAGTGGTTATGTGACTGATTCTGCCGCCTCAGCGACGGCGCTTGCCACTGGCGTTAAGAGCTATAA CGGTGCCATCTCGGTTGACGTAGACAAGCGCCCGCTAACCACCATTATGCAGATGGCTAAAGCGCGCGGCATGGCAACTG GCGTGGCCGTCACCTCTCAAGTCAATCATGCTACCCCCGCCGCGTTTCTTACTCATAATGAAAGCCGTCGTAATTACGAC GAAATAGCGCAAAGCTACTTAAGCTCTGATACCGACGTCATACTCGGTGGGGGACAGAAGTTCTTCCCTGAAGCGTTACT TGAACAATTTACCGCCAAGGGTTACCAGCATATTAGCCAGCTTAGCCAGCTCGATACGCTAACCCAAGGTAAAGCCTTAG GTCTGTTTGCCGAAGTGCAGATGCCATGGGTTATCGATCAACAAGACTCGGCTCAGTTAAGCTTGCTGACCCAAAAGGCC TTAGAGCTACTGTCACAAAACGAAAAAGGCTTTGTACTACTGGTTGAAGGTAGCCTAATTGACTGGGCGGGGCATAACAA CGATATCGCCAGCGCCATGGGCGAGATGCATGGCTTTGCCAATGCCATCGAAGTTGTCGAGCAATTTGTGCGCGCTAACC CAGACACCTTGATGGTTATTACTGCCGATCATAATACCGGCGGCCTCTCTATCGGAGCCAATGGCGAATATGCTTGGGAT ACCGCTTTACTCCAAGGTATTCAAGCAAGCCCTGCTACCATAGCAGAGCAAGCGATCGCCATCGATGATTGGCAAGCGTT TGTGAGTCAACAGCTAGGCTTTGAACTCAAGCAAGATGAATTGCAGCGCCTGAGTAATGCGCGTATGCAAGGTAAGGTCG CACTCGAAACCAGCCTAAAACAGCTTATCGATAGTCGTAGCTTCACCGGCTGGACCACCAGTGGTCACACGGGTGGCGAT GTACAGGTTTTTGCCGCGGGCCCTGCGGCCGATCTGTTTAAAGGCAATCAAGACAATACCAATATCGCCGAAAAAATGAT GAGTTTATTGCCACGTCAGGAGCAGCCGTAG
Upstream 100 bases:
>100_bases TCAAAGAAATTGAAGCGGCGTTTGATGTCGACATCACCGGCATGTTGATGGATGCTATCGAAGCACGCATTAATAAGTCG GCTTAGCCAAAGGATCCGGC
Downstream 100 bases:
>100_bases TCAATACGCTTATCATTTAATACGCTTCACTTAAATCAGGAAAGGCCGCTGTCATCTGCGGTCTTTTTTATACCTATCCA ATCTTCGTCAACACGCAAAA
Product: alkaline phosphatase
Products: NA
Alternate protein names: Alkaline phosphatase III; APase III [H]
Number of amino acids: Translated: 436; Mature: 436
Protein sequence:
>436_residues MNLTKTLTWTISALVLLPLFAAANVDIHDAPSRPKNMIIMIGDGMGPAYTSAYRYYQDNPDTEEIEQTVFDRLLVGMAST YPARKSGYVTDSAASATALATGVKSYNGAISVDVDKRPLTTIMQMAKARGMATGVAVTSQVNHATPAAFLTHNESRRNYD EIAQSYLSSDTDVILGGGQKFFPEALLEQFTAKGYQHISQLSQLDTLTQGKALGLFAEVQMPWVIDQQDSAQLSLLTQKA LELLSQNEKGFVLLVEGSLIDWAGHNNDIASAMGEMHGFANAIEVVEQFVRANPDTLMVITADHNTGGLSIGANGEYAWD TALLQGIQASPATIAEQAIAIDDWQAFVSQQLGFELKQDELQRLSNARMQGKVALETSLKQLIDSRSFTGWTTSGHTGGD VQVFAAGPAADLFKGNQDNTNIAEKMMSLLPRQEQP
Sequences:
>Translated_436_residues MNLTKTLTWTISALVLLPLFAAANVDIHDAPSRPKNMIIMIGDGMGPAYTSAYRYYQDNPDTEEIEQTVFDRLLVGMAST YPARKSGYVTDSAASATALATGVKSYNGAISVDVDKRPLTTIMQMAKARGMATGVAVTSQVNHATPAAFLTHNESRRNYD EIAQSYLSSDTDVILGGGQKFFPEALLEQFTAKGYQHISQLSQLDTLTQGKALGLFAEVQMPWVIDQQDSAQLSLLTQKA LELLSQNEKGFVLLVEGSLIDWAGHNNDIASAMGEMHGFANAIEVVEQFVRANPDTLMVITADHNTGGLSIGANGEYAWD TALLQGIQASPATIAEQAIAIDDWQAFVSQQLGFELKQDELQRLSNARMQGKVALETSLKQLIDSRSFTGWTTSGHTGGD VQVFAAGPAADLFKGNQDNTNIAEKMMSLLPRQEQP >Mature_436_residues MNLTKTLTWTISALVLLPLFAAANVDIHDAPSRPKNMIIMIGDGMGPAYTSAYRYYQDNPDTEEIEQTVFDRLLVGMAST YPARKSGYVTDSAASATALATGVKSYNGAISVDVDKRPLTTIMQMAKARGMATGVAVTSQVNHATPAAFLTHNESRRNYD EIAQSYLSSDTDVILGGGQKFFPEALLEQFTAKGYQHISQLSQLDTLTQGKALGLFAEVQMPWVIDQQDSAQLSLLTQKA LELLSQNEKGFVLLVEGSLIDWAGHNNDIASAMGEMHGFANAIEVVEQFVRANPDTLMVITADHNTGGLSIGANGEYAWD TALLQGIQASPATIAEQAIAIDDWQAFVSQQLGFELKQDELQRLSNARMQGKVALETSLKQLIDSRSFTGWTTSGHTGGD VQVFAAGPAADLFKGNQDNTNIAEKMMSLLPRQEQP
Specific function: Unknown
COG id: COG1785
COG function: function code P; Alkaline phosphatase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alkaline phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI157266296, Length=457, Percent_Identity=28.2275711159737, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI94721246, Length=462, Percent_Identity=28.5714285714286, Blast_Score=116, Evalue=4e-26, Organism=Homo sapiens, GI157266292, Length=450, Percent_Identity=28, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI116734717, Length=459, Percent_Identity=26.797385620915, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI294660770, Length=455, Percent_Identity=26.3736263736264, Blast_Score=100, Evalue=2e-21, Organism=Escherichia coli, GI48994877, Length=344, Percent_Identity=36.6279069767442, Blast_Score=171, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6320689, Length=482, Percent_Identity=29.6680497925311, Blast_Score=173, Evalue=5e-44, Organism=Drosophila melanogaster, GI21355981, Length=449, Percent_Identity=26.5033407572383, Blast_Score=115, Evalue=8e-26, Organism=Drosophila melanogaster, GI21355151, Length=456, Percent_Identity=26.5350877192982, Blast_Score=106, Evalue=3e-23, Organism=Drosophila melanogaster, GI85725200, Length=444, Percent_Identity=26.8018018018018, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI85815833, Length=444, Percent_Identity=26.8018018018018, Blast_Score=106, Evalue=4e-23, Organism=Drosophila melanogaster, GI21358067, Length=460, Percent_Identity=25.6521739130435, Blast_Score=102, Evalue=6e-22, Organism=Drosophila melanogaster, GI24657842, Length=456, Percent_Identity=25.6578947368421, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI18859923, Length=413, Percent_Identity=25.90799031477, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24651554, Length=459, Percent_Identity=27.4509803921569, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI24657835, Length=455, Percent_Identity=25.7142857142857, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24657827, Length=456, Percent_Identity=25.6578947368421, Blast_Score=93, Evalue=4e-19,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR001952 - InterPro: IPR018299 - InterPro: IPR017850 [H]
Pfam domain/function: PF00245 Alk_phosphatase [H]
EC number: =3.1.3.1 [H]
Molecular weight: Translated: 47204; Mature: 47204
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS00123 ALKALINE_PHOSPHATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLTKTLTWTISALVLLPLFAAANVDIHDAPSRPKNMIIMIGDGMGPAYTSAYRYYQDNP CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC DTEEIEQTVFDRLLVGMASTYPARKSGYVTDSAASATALATGVKSYNGAISVDVDKRPLT CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHH TIMQMAKARGMATGVAVTSQVNHATPAAFLTHNESRRNYDEIAQSYLSSDTDVILGGGQK HHHHHHHHCCCHHHHHHCCCCCCCCCHHEEECCCCCCCHHHHHHHHHCCCCCEEEECCCH FFPEALLEQFTAKGYQHISQLSQLDTLTQGKALGLFAEVQMPWVIDQQDSAQLSLLTQKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCHHHHHHHHHH LELLSQNEKGFVLLVEGSLIDWAGHNNDIASAMGEMHGFANAIEVVEQFVRANPDTLMVI HHHHCCCCCCEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE TADHNTGGLSIGANGEYAWDTALLQGIQASPATIAEQAIAIDDWQAFVSQQLGFELKQDE EECCCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LQRLSNARMQGKVALETSLKQLIDSRSFTGWTTSGHTGGDVQVFAAGPAADLFKGNQDNT HHHHHCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCH NIAEKMMSLLPRQEQP HHHHHHHHHCCCCCCC >Mature Secondary Structure MNLTKTLTWTISALVLLPLFAAANVDIHDAPSRPKNMIIMIGDGMGPAYTSAYRYYQDNP CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC DTEEIEQTVFDRLLVGMASTYPARKSGYVTDSAASATALATGVKSYNGAISVDVDKRPLT CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHH TIMQMAKARGMATGVAVTSQVNHATPAAFLTHNESRRNYDEIAQSYLSSDTDVILGGGQK HHHHHHHHCCCHHHHHHCCCCCCCCCHHEEECCCCCCCHHHHHHHHHCCCCCEEEECCCH FFPEALLEQFTAKGYQHISQLSQLDTLTQGKALGLFAEVQMPWVIDQQDSAQLSLLTQKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCHHHHHHHHHH LELLSQNEKGFVLLVEGSLIDWAGHNNDIASAMGEMHGFANAIEVVEQFVRANPDTLMVI HHHHCCCCCCEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE TADHNTGGLSIGANGEYAWDTALLQGIQASPATIAEQAIAIDDWQAFVSQQLGFELKQDE EECCCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LQRLSNARMQGKVALETSLKQLIDSRSFTGWTTSGHTGGDVQVFAAGPAADLFKGNQDNT HHHHHCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCH NIAEKMMSLLPRQEQP HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1898729; 9202461; 9384377; 2113910; 2105301 [H]