| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is ydhV [H]
Identifier: 167622632
GI number: 167622632
Start: 852974
End: 855193
Strand: Reverse
Name: ydhV [H]
Synonym: Shal_0692
Alternate gene names: 167622632
Gene position: 855193-852974 (Counterclockwise)
Preceding gene: 167622633
Following gene: 167622631
Centisome position: 16.36
GC content: 45.05
Gene sequence:
>2220_bases ATGAATACCGAATTTGGCGGTTGGGCCGGTTATGTCTTACGTGTAGACCTCACAAACAATATTATAAAAAAAGAAAGTAC AAATAAATACCACAACTATATCGGCGGGATGGGCATTGGTTATAAAGTATTATGGGATAACCATAAGGATGGAATTAAAG CCACAGATGAAGGAAATAGATTAATTATATCTGCTGGACCATTAAGTGGTTCAGGAGCTATATGTTCAGCAAGAACGACT ATTACTTCTAGAAGTCCTGTAATTAGACAGCATTTAATAACTGACGGCCATTTTGGTGGTCATTTTTCGCCCGAATTAAA ATATGCTGGATATGATGCGATTATCATTGAAGGTAAATCACCAACCCCAGTTTGGCTAAAAATAATAGACGATGAAGTCA CGTTAGAGCCTGCCGATACGATATGGGGCAAAGGTATGTTTGATACTTTTGCCGCTGTGGCCAAAATGATGGGACAGCAA GCCCAAGTTGCTGCTATTGGGCCAGCGGGTGAAAACTTAGTTTCTCAGTCAACTATTCAAACACAAGGTGGTCACTCTGC AGGCGGCCATGGGGCAGTATTAGGCTCAAAACAACTCAAAGCCATCGGCGTCATAGGTAGCGGTGTAGTGAATGTAGTCG CTAACAATGAACAGCTCAGGAAGTTAGATGATCATATCTTAGGCATTATTGGTGCAAACAACCAAGGTGTTGTTCCTCAC CAACCTCAGACTTGGGCTGAGTATAGCTCCAGTATTAGTCGCTGGCGCGGCGGACCTGGCGTCAAATGGGGCGCAGCCGA TAATCCTGTCGATGTTGGTGAAACGCCGTGGAATGATCGCCAAAAAGTGGGGATGCGCACCTCAATGGCTGAAATGTATT TCGGCCGTGAAGAAGCAAATAAAATCTTTAAGCGTCCGAGTGGCTGTCATTCATGCCCTATTCGCTGCTTTTGCGAAGTT AAAAACCCGAAAATGAAGACTGAATACAAGCTGCCAACCGACAATATTTCCAATACCTGCATGGGATTCCTCGACCCTTG GTATGTAATGGGCCTACCTGGAAACTCTGAAAAAAGAACAGATATTCAAACAGTTGGTGCTTACCACATGGATAACTACG GCGTATGGAGTGCTTACGGCCAGCTATCCCATATTATGCGGGAGTTTATCACCCGTGATTTCTGGAAAGAGCTATTACCA GCACAAGAATTTGCTGCGATTAACTGGCAACAGCAAAAAGATCTCGACGCCCATTTTATGGAAGATTTCTATACTCGTCT CGCCTTTGGTCTGCAATATAACGGCTCCAACATTCTTGGGCGCTTCCTCGGTAAAGGCGTGCATGAGTTTATTAACGAAG AGGGCGAGCTCTACAACATCCAAGATGTTCTCAACGGCGTTGAGACACCGCGTATGGCGAAGCTAAGCTTTAATCTTGAG AGCGATGCAGCCTATGGCTTATTAGGTAAAACTTACAGCGTATTCCTCGATAAAGGCGTCAAAGTCTTCAACCGTTCTAT GGTTGGTGGAACCCACCATGCGAGTGAAACAGCGGGGCAAGTTGGCGCGCTACTCAATACAGTATTTAACCGAGATCCTC AGTGTCACTCACACATCAACTTGGTTAACTGCGGCCTACCCTATGGCAAGATCTCAGAGGTAGCCGACAAAATGTGGGGC GCGGGCGCGTTTGACCCAGTTAAACACTATAAACCAATGAATATTGCAAAAGCCAAATTTGCCAAATGGTGCTTAGTTAA AAACGTCTTACATGACTCGCTAACATTATGTAATTGGATGTTCCCTCTGATTGTTTCGCCCGATGCCAAGAAAGACTATC AAGGCGATAGCTCAATTGAGTCACAAATGTTTAGCTTAGTTACCGGGATCCAAACCAGTGAGCAAGAACTTGACGACAAG GCGGAGGGGATCTTACAACTTCATAGAGCACTTTCAGTCCTTCAGATGCAGGAGATGGATCAGCGCAATCAACATGATGT GCTAACAGAGTGGGTTTACGACTTAGATCCTGACAAAGTCTTTGGTGATGAAGGCACGATTAAAATGGGCCGTGAAGATA TGCAGCTTGGTCTAGACCTTTTCTATGCCGAAATGGGCTGGGACAGAGAAACTGGGACGCCCACTCGTGCAACGCTAGAG AAGTTCAAGCTAGGTTACGTTGCAGACAAACTTGAAAGCTTAGGCTTGTTACCGGCATAA
Upstream 100 bases:
>100_bases TTAAATTTTATACATGGGAAGAAGCTGTCGCTGAAGTTGAGCACCATGAAAAGTATCTAAAACTAATTTAACTATTTATA AATGTCATAGGGACTTATAT
Downstream 100 bases:
>100_bases GCATATGGAATCTTTAGTCGATTTTATTCGCTTATTGAGTGAACACGGCCGCCTAGCGACGGCCAATCAAGTGATTGCAA TTGCTGGATTAGAGCTAGAG
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 739; Mature: 739
Protein sequence:
>739_residues MNTEFGGWAGYVLRVDLTNNIIKKESTNKYHNYIGGMGIGYKVLWDNHKDGIKATDEGNRLIISAGPLSGSGAICSARTT ITSRSPVIRQHLITDGHFGGHFSPELKYAGYDAIIIEGKSPTPVWLKIIDDEVTLEPADTIWGKGMFDTFAAVAKMMGQQ AQVAAIGPAGENLVSQSTIQTQGGHSAGGHGAVLGSKQLKAIGVIGSGVVNVVANNEQLRKLDDHILGIIGANNQGVVPH QPQTWAEYSSSISRWRGGPGVKWGAADNPVDVGETPWNDRQKVGMRTSMAEMYFGREEANKIFKRPSGCHSCPIRCFCEV KNPKMKTEYKLPTDNISNTCMGFLDPWYVMGLPGNSEKRTDIQTVGAYHMDNYGVWSAYGQLSHIMREFITRDFWKELLP AQEFAAINWQQQKDLDAHFMEDFYTRLAFGLQYNGSNILGRFLGKGVHEFINEEGELYNIQDVLNGVETPRMAKLSFNLE SDAAYGLLGKTYSVFLDKGVKVFNRSMVGGTHHASETAGQVGALLNTVFNRDPQCHSHINLVNCGLPYGKISEVADKMWG AGAFDPVKHYKPMNIAKAKFAKWCLVKNVLHDSLTLCNWMFPLIVSPDAKKDYQGDSSIESQMFSLVTGIQTSEQELDDK AEGILQLHRALSVLQMQEMDQRNQHDVLTEWVYDLDPDKVFGDEGTIKMGREDMQLGLDLFYAEMGWDRETGTPTRATLE KFKLGYVADKLESLGLLPA
Sequences:
>Translated_739_residues MNTEFGGWAGYVLRVDLTNNIIKKESTNKYHNYIGGMGIGYKVLWDNHKDGIKATDEGNRLIISAGPLSGSGAICSARTT ITSRSPVIRQHLITDGHFGGHFSPELKYAGYDAIIIEGKSPTPVWLKIIDDEVTLEPADTIWGKGMFDTFAAVAKMMGQQ AQVAAIGPAGENLVSQSTIQTQGGHSAGGHGAVLGSKQLKAIGVIGSGVVNVVANNEQLRKLDDHILGIIGANNQGVVPH QPQTWAEYSSSISRWRGGPGVKWGAADNPVDVGETPWNDRQKVGMRTSMAEMYFGREEANKIFKRPSGCHSCPIRCFCEV KNPKMKTEYKLPTDNISNTCMGFLDPWYVMGLPGNSEKRTDIQTVGAYHMDNYGVWSAYGQLSHIMREFITRDFWKELLP AQEFAAINWQQQKDLDAHFMEDFYTRLAFGLQYNGSNILGRFLGKGVHEFINEEGELYNIQDVLNGVETPRMAKLSFNLE SDAAYGLLGKTYSVFLDKGVKVFNRSMVGGTHHASETAGQVGALLNTVFNRDPQCHSHINLVNCGLPYGKISEVADKMWG AGAFDPVKHYKPMNIAKAKFAKWCLVKNVLHDSLTLCNWMFPLIVSPDAKKDYQGDSSIESQMFSLVTGIQTSEQELDDK AEGILQLHRALSVLQMQEMDQRNQHDVLTEWVYDLDPDKVFGDEGTIKMGREDMQLGLDLFYAEMGWDRETGTPTRATLE KFKLGYVADKLESLGLLPA >Mature_739_residues MNTEFGGWAGYVLRVDLTNNIIKKESTNKYHNYIGGMGIGYKVLWDNHKDGIKATDEGNRLIISAGPLSGSGAICSARTT ITSRSPVIRQHLITDGHFGGHFSPELKYAGYDAIIIEGKSPTPVWLKIIDDEVTLEPADTIWGKGMFDTFAAVAKMMGQQ AQVAAIGPAGENLVSQSTIQTQGGHSAGGHGAVLGSKQLKAIGVIGSGVVNVVANNEQLRKLDDHILGIIGANNQGVVPH QPQTWAEYSSSISRWRGGPGVKWGAADNPVDVGETPWNDRQKVGMRTSMAEMYFGREEANKIFKRPSGCHSCPIRCFCEV KNPKMKTEYKLPTDNISNTCMGFLDPWYVMGLPGNSEKRTDIQTVGAYHMDNYGVWSAYGQLSHIMREFITRDFWKELLP AQEFAAINWQQQKDLDAHFMEDFYTRLAFGLQYNGSNILGRFLGKGVHEFINEEGELYNIQDVLNGVETPRMAKLSFNLE SDAAYGLLGKTYSVFLDKGVKVFNRSMVGGTHHASETAGQVGALLNTVFNRDPQCHSHINLVNCGLPYGKISEVADKMWG AGAFDPVKHYKPMNIAKAKFAKWCLVKNVLHDSLTLCNWMFPLIVSPDAKKDYQGDSSIESQMFSLVTGIQTSEQELDDK AEGILQLHRALSVLQMQEMDQRNQHDVLTEWVYDLDPDKVFGDEGTIKMGREDMQLGLDLFYAEMGWDRETGTPTRATLE KFKLGYVADKLESLGLLPA
Specific function: Unknown
COG id: COG2414
COG function: function code C; Aldehyde:ferredoxin oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AOR/FOR family [H]
Homologues:
Organism=Escherichia coli, GI1787962, Length=742, Percent_Identity=40.9703504043127, Blast_Score=552, Evalue=1e-158,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013985 - InterPro: IPR013983 - InterPro: IPR001203 [H]
Pfam domain/function: PF01314 AFOR_C; PF02730 AFOR_N [H]
EC number: NA
Molecular weight: Translated: 81866; Mature: 81866
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTEFGGWAGYVLRVDLTNNIIKKESTNKYHNYIGGMGIGYKVLWDNHKDGIKATDEGNR CCCCCCCEEEEEEEEECCCCHHHCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCE LIISAGPLSGSGAICSARTTITSRSPVIRQHLITDGHFGGHFSPELKYAGYDAIIIEGKS EEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEECCC PTPVWLKIIDDEVTLEPADTIWGKGMFDTFAAVAKMMGQQAQVAAIGPAGENLVSQSTIQ CCCEEEEEECCCEEECCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC TQGGHSAGGHGAVLGSKQLKAIGVIGSGVVNVVANNEQLRKLDDHILGIIGANNQGVVPH CCCCCCCCCCCEEECCCCEEEEEEECCCEEEEEECCHHHHHHHHHEEEEEECCCCCCCCC QPQTWAEYSSSISRWRGGPGVKWGAADNPVDVGETPWNDRQKVGMRTSMAEMYFGREEAN CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHCCHHHHH KIFKRPSGCHSCPIRCFCEVKNPKMKTEYKLPTDNISNTCMGFLDPWYVMGLPGNSEKRT HHHCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCC DIQTVGAYHMDNYGVWSAYGQLSHIMREFITRDFWKELLPAQEFAAINWQQQKDLDAHFM HHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCHHHHH EDFYTRLAFGLQYNGSNILGRFLGKGVHEFINEEGELYNIQDVLNGVETPRMAKLSFNLE HHHHHHHHHCEEECCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCEEEEEECCC SDAAYGLLGKTYSVFLDKGVKVFNRSMVGGTHHASETAGQVGALLNTVFNRDPQCHSHIN CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCE LVNCGLPYGKISEVADKMWGAGAFDPVKHYKPMNIAKAKFAKWCLVKNVLHDSLTLCNWM EEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FPLIVSPDAKKDYQGDSSIESQMFSLVTGIQTSEQELDDKAEGILQLHRALSVLQMQEMD HHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QRNQHDVLTEWVYDLDPDKVFGDEGTIKMGREDMQLGLDLFYAEMGWDRETGTPTRATLE CCCHHHHHHHHHHCCCCCCEECCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH KFKLGYVADKLESLGLLPA HHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNTEFGGWAGYVLRVDLTNNIIKKESTNKYHNYIGGMGIGYKVLWDNHKDGIKATDEGNR CCCCCCCEEEEEEEEECCCCHHHCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCE LIISAGPLSGSGAICSARTTITSRSPVIRQHLITDGHFGGHFSPELKYAGYDAIIIEGKS EEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEECCC PTPVWLKIIDDEVTLEPADTIWGKGMFDTFAAVAKMMGQQAQVAAIGPAGENLVSQSTIQ CCCEEEEEECCCEEECCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHC TQGGHSAGGHGAVLGSKQLKAIGVIGSGVVNVVANNEQLRKLDDHILGIIGANNQGVVPH CCCCCCCCCCCEEECCCCEEEEEEECCCEEEEEECCHHHHHHHHHEEEEEECCCCCCCCC QPQTWAEYSSSISRWRGGPGVKWGAADNPVDVGETPWNDRQKVGMRTSMAEMYFGREEAN CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHCCHHHHH KIFKRPSGCHSCPIRCFCEVKNPKMKTEYKLPTDNISNTCMGFLDPWYVMGLPGNSEKRT HHHCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCC DIQTVGAYHMDNYGVWSAYGQLSHIMREFITRDFWKELLPAQEFAAINWQQQKDLDAHFM HHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCHHHHH EDFYTRLAFGLQYNGSNILGRFLGKGVHEFINEEGELYNIQDVLNGVETPRMAKLSFNLE HHHHHHHHHCEEECCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCCCEEEEEECCC SDAAYGLLGKTYSVFLDKGVKVFNRSMVGGTHHASETAGQVGALLNTVFNRDPQCHSHIN CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCE LVNCGLPYGKISEVADKMWGAGAFDPVKHYKPMNIAKAKFAKWCLVKNVLHDSLTLCNWM EEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FPLIVSPDAKKDYQGDSSIESQMFSLVTGIQTSEQELDDKAEGILQLHRALSVLQMQEMD HHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QRNQHDVLTEWVYDLDPDKVFGDEGTIKMGREDMQLGLDLFYAEMGWDRETGTPTRATLE CCCHHHHHHHHHHCCCCCCEECCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH KFKLGYVADKLESLGLLPA HHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9023191; 9278503 [H]