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The map label for this gene is ydhY [H]

Identifier: 167622633

GI number: 167622633

Start: 855223

End: 855864

Strand: Reverse

Name: ydhY [H]

Synonym: Shal_0693

Alternate gene names: 167622633

Gene position: 855864-855223 (Counterclockwise)

Preceding gene: 167622636

Following gene: 167622632

Centisome position: 16.37

GC content: 44.55

Gene sequence:

>642_bases
ATGATTACAAGGAGAGCACTTCTTTCTAATGGAGCCAAGGTCGCTGTAGGGACAGTTTATTGTGGGTCCTTGGTTAGCTT
CCTTACAGGTTGCAATAGCGATGATGACAATATAAAAATAGAAGTTTTACCTGGCGGTTTAATGGTCGTTGATCCTGTAC
TTTGCGTGGGCTGTAGGCGCTGTGAAATCGCCTGTAGCTGGAGCCATGGCAAATCTGCTGTAAGCCCAAATACAGCTCGA
ATTAAAGTTGTCAAAAACCTCAATTTTGGCCCTCATGGTGTACAAGATAATTACCATCAACAGCGAGGTGAAGAAGGCGA
TGGCACTATCGTTCCAGAGACTTGCCGACAGTGCAATGTGTGTATGGCCGCCTGCCCTCAACAAGCCATTTCAATCGATG
AAGCTACCGGTGCACGTGTGGTTGATGAAGAACTTTGTATAGGCTGTGGCTACTGCGCAGAAAACTGCCCACAGCAAGTT
ATTACAATCGATAAGCTCACTGAAAAAGCATTAAAGTGCGACCTCTGCCAAGGTAAACCCAACTGTGCTGAAGTTTGCCC
TACTGGTGCAATTAAATTTTATACATGGGAAGAAGCTGTCGCTGAAGTTGAGCACCATGAAAAGTATCTAAAACTAATTT
AA

Upstream 100 bases:

>100_bases
ACAATCAATTTGTTCAATTATTAGTTAGTAAATACTCAAAGCCCAAAATAAACACCCTAATTACATTTTTAATTTTATAT
TACTAAAGAGGAAATCAAAA

Downstream 100 bases:

>100_bases
CTATTTATAAATGTCATAGGGACTTATATATGAATACCGAATTTGGCGGTTGGGCCGGTTATGTCTTACGTGTAGACCTC
ACAAACAATATTATAAAAAA

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MITRRALLSNGAKVAVGTVYCGSLVSFLTGCNSDDDNIKIEVLPGGLMVVDPVLCVGCRRCEIACSWSHGKSAVSPNTAR
IKVVKNLNFGPHGVQDNYHQQRGEEGDGTIVPETCRQCNVCMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQV
ITIDKLTEKALKCDLCQGKPNCAEVCPTGAIKFYTWEEAVAEVEHHEKYLKLI

Sequences:

>Translated_213_residues
MITRRALLSNGAKVAVGTVYCGSLVSFLTGCNSDDDNIKIEVLPGGLMVVDPVLCVGCRRCEIACSWSHGKSAVSPNTAR
IKVVKNLNFGPHGVQDNYHQQRGEEGDGTIVPETCRQCNVCMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQV
ITIDKLTEKALKCDLCQGKPNCAEVCPTGAIKFYTWEEAVAEVEHHEKYLKLI
>Mature_213_residues
MITRRALLSNGAKVAVGTVYCGSLVSFLTGCNSDDDNIKIEVLPGGLMVVDPVLCVGCRRCEIACSWSHGKSAVSPNTAR
IKVVKNLNFGPHGVQDNYHQQRGEEGDGTIVPETCRQCNVCMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQV
ITIDKLTEKALKCDLCQGKPNCAEVCPTGAIKFYTWEEAVAEVEHHEKYLKLI

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787963, Length=202, Percent_Identity=33.1683168316832, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790326, Length=158, Percent_Identity=30.379746835443, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787749, Length=172, Percent_Identity=29.6511627906977, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789370, Length=191, Percent_Identity=31.9371727748691, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI2367345, Length=169, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87082179, Length=165, Percent_Identity=31.5151515151515, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 23025; Mature: 23025

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
9.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRRALLSNGAKVAVGTVYCGSLVSFLTGCNSDDDNIKIEVLPGGLMVVDPVLCVGCRR
CCCCHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCE
CEIACSWSHGKSAVSPNTARIKVVKNLNFGPHGVQDNYHQQRGEEGDGTIVPETCRQCNV
EEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHH
CMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQVITIDKLTEKALKCDLCQGKP
HHHHCCHHHCCCCCCCCCEEECHHHHEECCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
NCAEVCPTGAIKFYTWEEAVAEVEHHEKYLKLI
CHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITRRALLSNGAKVAVGTVYCGSLVSFLTGCNSDDDNIKIEVLPGGLMVVDPVLCVGCRR
CCCCHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCE
CEIACSWSHGKSAVSPNTARIKVVKNLNFGPHGVQDNYHQQRGEEGDGTIVPETCRQCNV
EEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHH
CMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQVITIDKLTEKALKCDLCQGKP
HHHHCCHHHCCCCCCCCCEEECHHHHEECCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
NCAEVCPTGAIKFYTWEEAVAEVEHHEKYLKLI
CHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur; Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]