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The map label for this gene is yjgF [C]

Identifier: 167622626

GI number: 167622626

Start: 845414

End: 846643

Strand: Reverse

Name: yjgF [C]

Synonym: Shal_0686

Alternate gene names: 167622626

Gene position: 846643-845414 (Counterclockwise)

Preceding gene: 167622627

Following gene: 167622625

Centisome position: 16.2

GC content: 37.07

Gene sequence:

>1230_bases
ATGAGTAGCGATATCATAAAGCTTTCAAGAAACACTGAAAATGCACCAAAAAATGCTGTATCGACACAGACTGTCGCTTT
TTCTCATTACAATAATATTTCAGCTCAATTACCTATCGATCCTAAAACGGGTGAAATTGTAATTGGCTGTATAAAAAATC
AAGCGAAGCAATGCTTAGCAAATATTAAAGCAATTGTAGAGAGCATCGACCACGTTATGGACGACGTCGTTAAAATCAAT
ATATTCGTTAAAAATATCTCAGATATTGATCATATAGACGAAATTTATACCGAATTTTTCCAAGGCCCCCTTCCTACACG
GACGGTCGTTGCAGTTGCAGCCTTACCAATAAATGATGCTTTAGTGCAAATTGATGCACTTATCTCAAACGGAGAAGGTA
CAGCTCCACAAGCCCCCTGTGCTCTGGTTAAAGTATCAAGAAACACAGCCAATGCACCTAAAGGCTTATATTCGCAAACT
GTCGCATTTTCTCATTATAATAATCTTTCATCTCAATTACCTATCGATCCAAAAACAGGTGAAATGATAATGGGGGGGAT
AGAAGAACAGACTGAGCAGTGCTTAAACAACATTAAAGCGATTTTGGAAAGTATCGACCACGTTATGGACGATGTAGTAA
AAACAACCATATTCGTTAAAAACATCTCGGATATTGAAGCTGTAAACAAAGTTTGCATGAAATTTTTCCCAAGCTATGTT
CCTGCACGGACAATAGTTAACGTTTCAGCTTTACCTATGGATGCTTTAATACAAATTGATACTGCTGTGTCACATGGAGA
TGGTACCCCACCACAACTTCCTGAAGATACCCGTCTACTTATCATAGAAGCAAGCAATACGGAACATGCACCAAAAGTGC
CATACTCACATACTGTCGCATTTTCTCATTACAATCATATTTCAGGTCAACTACCTTTAGACCCGAAAACTAATAAAATA
ATCGTTGGTGATGTAGCAGCACAGGCTAAACAATGTTTAAAAAATATCCAAGAAATTGTGAAAAGTGTCGATCACGTTAT
GGACGATATCGTAAAAATAAATCTTCAACTTAAAAATATTGCAGATATTGATGTTGTAAACAACGTTTACAACACATTTT
TTAAGAGTGATCTTCCTGCAAGAACAGTCATTGGCGTTTCAGCTATCCCTATGGATGCTTTAATACAAATTGATGCCGTT
GTTTCTAATTGTGAAGGTACACCGCCATAG

Upstream 100 bases:

>100_bases
AGCGTAAAGCAGGTTCGGGCTCCTTAACTCCGCATCGTTTGCGACTGAACCTGCCAACTAAATCAATATAAATACGTTGT
TACAAAAGGATGAATATAAA

Downstream 100 bases:

>100_bases
ACATGACAGGCATATGATTACTGATGGGTAGTCTTCAGTCTTTGTAAGTTGAATTCAACTTACAAAGACTTGGGTTGAGT
TTTATTGTTAATAGTTTAAA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MSSDIIKLSRNTENAPKNAVSTQTVAFSHYNNISAQLPIDPKTGEIVIGCIKNQAKQCLANIKAIVESIDHVMDDVVKIN
IFVKNISDIDHIDEIYTEFFQGPLPTRTVVAVAALPINDALVQIDALISNGEGTAPQAPCALVKVSRNTANAPKGLYSQT
VAFSHYNNLSSQLPIDPKTGEMIMGGIEEQTEQCLNNIKAILESIDHVMDDVVKTTIFVKNISDIEAVNKVCMKFFPSYV
PARTIVNVSALPMDALIQIDTAVSHGDGTPPQLPEDTRLLIIEASNTEHAPKVPYSHTVAFSHYNHISGQLPLDPKTNKI
IVGDVAAQAKQCLKNIQEIVKSVDHVMDDIVKINLQLKNIADIDVVNNVYNTFFKSDLPARTVIGVSAIPMDALIQIDAV
VSNCEGTPP

Sequences:

>Translated_409_residues
MSSDIIKLSRNTENAPKNAVSTQTVAFSHYNNISAQLPIDPKTGEIVIGCIKNQAKQCLANIKAIVESIDHVMDDVVKIN
IFVKNISDIDHIDEIYTEFFQGPLPTRTVVAVAALPINDALVQIDALISNGEGTAPQAPCALVKVSRNTANAPKGLYSQT
VAFSHYNNLSSQLPIDPKTGEMIMGGIEEQTEQCLNNIKAILESIDHVMDDVVKTTIFVKNISDIEAVNKVCMKFFPSYV
PARTIVNVSALPMDALIQIDTAVSHGDGTPPQLPEDTRLLIIEASNTEHAPKVPYSHTVAFSHYNHISGQLPLDPKTNKI
IVGDVAAQAKQCLKNIQEIVKSVDHVMDDIVKINLQLKNIADIDVVNNVYNTFFKSDLPARTVIGVSAIPMDALIQIDAV
VSNCEGTPP
>Mature_408_residues
SSDIIKLSRNTENAPKNAVSTQTVAFSHYNNISAQLPIDPKTGEIVIGCIKNQAKQCLANIKAIVESIDHVMDDVVKINI
FVKNISDIDHIDEIYTEFFQGPLPTRTVVAVAALPINDALVQIDALISNGEGTAPQAPCALVKVSRNTANAPKGLYSQTV
AFSHYNNLSSQLPIDPKTGEMIMGGIEEQTEQCLNNIKAILESIDHVMDDVVKTTIFVKNISDIEAVNKVCMKFFPSYVP
ARTIVNVSALPMDALIQIDTAVSHGDGTPPQLPEDTRLLIIEASNTEHAPKVPYSHTVAFSHYNHISGQLPLDPKTNKII
VGDVAAQAKQCLKNIQEIVKSVDHVMDDIVKINLQLKNIADIDVVNNVYNTFFKSDLPARTVIGVSAIPMDALIQIDAVV
SNCEGTPP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=39.0243902439024, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082396, Length=117, Percent_Identity=40.1709401709402, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87082213, Length=97, Percent_Identity=38.1443298969072, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=129, Percent_Identity=40.3100775193798, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI25148896, Length=129, Percent_Identity=40.3100775193798, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71982068, Length=129, Percent_Identity=40.3100775193798, Blast_Score=90, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322138, Length=106, Percent_Identity=28.3018867924528, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6320899, Length=96, Percent_Identity=31.25, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19921376, Length=110, Percent_Identity=35.4545454545455, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 44434; Mature: 44303

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDIIKLSRNTENAPKNAVSTQTVAFSHYNNISAQLPIDPKTGEIVIGCIKNQAKQCLA
CCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCEEEEHHHHHHHHHHH
NIKAIVESIDHVMDDVVKINIFVKNISDIDHIDEIYTEFFQGPLPTRTVVAVAALPINDA
HHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHEEEECCCCHH
LVQIDALISNGEGTAPQAPCALVKVSRNTANAPKGLYSQTVAFSHYNNLSSQLPIDPKTG
HHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
EMIMGGIEEQTEQCLNNIKAILESIDHVMDDVVKTTIFVKNISDIEAVNKVCMKFFPSYV
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
PARTIVNVSALPMDALIQIDTAVSHGDGTPPQLPEDTRLLIIEASNTEHAPKVPYSHTVA
CHHHEEEEECCCHHHHEEEEHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
FSHYNHISGQLPLDPKTNKIIVGDVAAQAKQCLKNIQEIVKSVDHVMDDIVKINLQLKNI
EEHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
ADIDVVNNVYNTFFKSDLPARTVIGVSAIPMDALIQIDAVVSNCEGTPP
CHHHHHHHHHHHHHHCCCCCHHEECCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSDIIKLSRNTENAPKNAVSTQTVAFSHYNNISAQLPIDPKTGEIVIGCIKNQAKQCLA
CCCEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCEEEEHHHHHHHHHHH
NIKAIVESIDHVMDDVVKINIFVKNISDIDHIDEIYTEFFQGPLPTRTVVAVAALPINDA
HHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHEEEECCCCHH
LVQIDALISNGEGTAPQAPCALVKVSRNTANAPKGLYSQTVAFSHYNNLSSQLPIDPKTG
HHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
EMIMGGIEEQTEQCLNNIKAILESIDHVMDDVVKTTIFVKNISDIEAVNKVCMKFFPSYV
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
PARTIVNVSALPMDALIQIDTAVSHGDGTPPQLPEDTRLLIIEASNTEHAPKVPYSHTVA
CHHHEEEEECCCHHHHEEEEHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
FSHYNHISGQLPLDPKTNKIIVGDVAAQAKQCLKNIQEIVKSVDHVMDDIVKINLQLKNI
EEHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCC
ADIDVVNNVYNTFFKSDLPARTVIGVSAIPMDALIQIDAVVSNCEGTPP
CHHHHHHHHHHHHHHCCCCCHHEECCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]