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The map label for this gene is yjcD [H]

Identifier: 167622600

GI number: 167622600

Start: 808636

End: 810012

Strand: Direct

Name: yjcD [H]

Synonym: Shal_0660

Alternate gene names: 167622600

Gene position: 808636-810012 (Clockwise)

Preceding gene: 167622599

Following gene: 167622601

Centisome position: 15.47

GC content: 47.06

Gene sequence:

>1377_bases
ATGTCAGATACTAATACGGTAGACAATGAATCATTACAACAAAATAAGTTAGCTTCACGGAATCAATTAGATAATTATTT
TGAAATCACAGAGCGAGGGAGCTCAGTCCGACAAGAGTTAATTGCCGGAGTGACCACCTTCTTGGCCATGGTTTATTCGG
TCATTGTGGTGCCGAGTATGCTAGGCGCCGCGGGGTTCGATCCCGGTGCGGTCTTTATTGCCACCTGTTTAATTGCCGCT
TTTGGCTCCCTGTTAATGGGCTTATGGGCCAAATTACCTATGGCGATTGGCTGCGCCATATCGCTGACCGCATTTACCGC
GTTTAGCTTAGTGCTAGGTCAAGGGGTGAGTATACCCGTTGCGCTTGGCGCGGTATTCCTTATGGGTGTCGTGTTTACTG
CAATTACAGTAACAGGCGTACGACAGTGGATCTTAACTAACTTACCCCATGGTATTGCCCATGGCACCGGTATCGGTATT
GGATTGTTTTTACTCCTGATTGCTGCTAACGGTGTTGGTTTGGTGGTTAAAAACCCTCATGCCGGTTTACCGGTAGCGTT
CGGTGATTTCACCTCCCTGCCAATTTTAATGTCAGTGTTAGGTTTAGCGGCAATTTTAGGACTTGAGAAGCGTCGCATCC
CTGGTGGTATTTTATTGGTGATCATTGCTATCTCAATTTTAGGGCTAATATTCGATCCTAACGTCAAGTATCAGGGCTTC
TTTGCTATGCCAAGTTTTGGCGGCGAAAACTCCCTAATCGGCACCATGGATATTATGGGTGCGCTTAATCCAATCATTTT
ACCGAGTGTTCTAGCCTTGGTGATGACGGCTATTTTCGATGCCACTGGCACCATTCGCGCCGTTGCAGGTCAAGCAAACT
TGCTTGATAGCAAAGGCCAAATTATCAATGGTGGTAAGGCGCTGACATCAGACTCTATCAGTAGCATTTTTGCCGGTGCA
GTCGGCGGCGCACCAGCAGCAGTTTATATCGAATCTGCAGCAGGTACCGCAGCTGGCGGCAAAACAGGCTTAACAGCCAC
GGTTGTAGGCGGCCTTTTTGCTTGCATGCTTTTCCTAGCTCCTATCAGTTATCTTGTGCCTGCTTACGCAACCGCACCCG
CTTTGATGTATGTGGGACTGCTGATGCTGTCCAATGTTAGCAAACTGGATATGAATGACTCGGTCGATGCCCTCTCTGGA
TTGGTTTGCGCCGTGTTTATCGTACTTACTGGCAATATCGTTACCGGTATCATGCTTGGTTTTACTTCACTTGTGGTAGG
CCGGGTTATTTCTGGTGACTGGCGCAAGCTCAATATAGGAACTGTAACTATTAGTGTCATTTTAATAATTTTTTATGCAG
GTGGCTGGGCGATTTAA

Upstream 100 bases:

>100_bases
ATCCTAGTGTGCTTTGCCGTGACGACCTTACTTGAAGTCAAATAGACACTTGCAAGATGGTGTTAACGCCCACTTTTGTG
GCAATAAAGGAAGAGATGAG

Downstream 100 bases:

>100_bases
TCTTGAATTAACCAATAACAATTAATCAATTTTATAGGGTCAGAAAAATGAACAATAAATGGATCTTTGCAACTCTACTA
TTAACACCACAGGCTTTTGC

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSDTNTVDNESLQQNKLASRNQLDNYFEITERGSSVRQELIAGVTTFLAMVYSVIVVPSMLGAAGFDPGAVFIATCLIAA
FGSLLMGLWAKLPMAIGCAISLTAFTAFSLVLGQGVSIPVALGAVFLMGVVFTAITVTGVRQWILTNLPHGIAHGTGIGI
GLFLLLIAANGVGLVVKNPHAGLPVAFGDFTSLPILMSVLGLAAILGLEKRRIPGGILLVIIAISILGLIFDPNVKYQGF
FAMPSFGGENSLIGTMDIMGALNPIILPSVLALVMTAIFDATGTIRAVAGQANLLDSKGQIINGGKALTSDSISSIFAGA
VGGAPAAVYIESAAGTAAGGKTGLTATVVGGLFACMLFLAPISYLVPAYATAPALMYVGLLMLSNVSKLDMNDSVDALSG
LVCAVFIVLTGNIVTGIMLGFTSLVVGRVISGDWRKLNIGTVTISVILIIFYAGGWAI

Sequences:

>Translated_458_residues
MSDTNTVDNESLQQNKLASRNQLDNYFEITERGSSVRQELIAGVTTFLAMVYSVIVVPSMLGAAGFDPGAVFIATCLIAA
FGSLLMGLWAKLPMAIGCAISLTAFTAFSLVLGQGVSIPVALGAVFLMGVVFTAITVTGVRQWILTNLPHGIAHGTGIGI
GLFLLLIAANGVGLVVKNPHAGLPVAFGDFTSLPILMSVLGLAAILGLEKRRIPGGILLVIIAISILGLIFDPNVKYQGF
FAMPSFGGENSLIGTMDIMGALNPIILPSVLALVMTAIFDATGTIRAVAGQANLLDSKGQIINGGKALTSDSISSIFAGA
VGGAPAAVYIESAAGTAAGGKTGLTATVVGGLFACMLFLAPISYLVPAYATAPALMYVGLLMLSNVSKLDMNDSVDALSG
LVCAVFIVLTGNIVTGIMLGFTSLVVGRVISGDWRKLNIGTVTISVILIIFYAGGWAI
>Mature_457_residues
SDTNTVDNESLQQNKLASRNQLDNYFEITERGSSVRQELIAGVTTFLAMVYSVIVVPSMLGAAGFDPGAVFIATCLIAAF
GSLLMGLWAKLPMAIGCAISLTAFTAFSLVLGQGVSIPVALGAVFLMGVVFTAITVTGVRQWILTNLPHGIAHGTGIGIG
LFLLLIAANGVGLVVKNPHAGLPVAFGDFTSLPILMSVLGLAAILGLEKRRIPGGILLVIIAISILGLIFDPNVKYQGFF
AMPSFGGENSLIGTMDIMGALNPIILPSVLALVMTAIFDATGTIRAVAGQANLLDSKGQIINGGKALTSDSISSIFAGAV
GGAPAAVYIESAAGTAAGGKTGLTATVVGGLFACMLFLAPISYLVPAYATAPALMYVGLLMLSNVSKLDMNDSVDALSGL
VCAVFIVLTGNIVTGIMLGFTSLVVGRVISGDWRKLNIGTVTISVILIIFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=439, Percent_Identity=76.0820045558087, Blast_Score=667, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=449, Percent_Identity=78.619153674833, Blast_Score=666, Evalue=0.0,
Organism=Escherichia coli, GI87082309, Length=447, Percent_Identity=37.1364653243848, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1790150, Length=438, Percent_Identity=36.5296803652968, Blast_Score=264, Evalue=9e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 47019; Mature: 46888

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDTNTVDNESLQQNKLASRNQLDNYFEITERGSSVRQELIAGVTTFLAMVYSVIVVPSM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGAAGFDPGAVFIATCLIAAFGSLLMGLWAKLPMAIGCAISLTAFTAFSLVLGQGVSIPV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ALGAVFLMGVVFTAITVTGVRQWILTNLPHGIAHGTGIGIGLFLLLIAANGVGLVVKNPH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEECCC
AGLPVAFGDFTSLPILMSVLGLAAILGLEKRRIPGGILLVIIAISILGLIFDPNVKYQGF
CCCCEECCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
FAMPSFGGENSLIGTMDIMGALNPIILPSVLALVMTAIFDATGTIRAVAGQANLLDSKGQ
EECCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCHHCCCCCC
IINGGKALTSDSISSIFAGAVGGAPAAVYIESAAGTAAGGKTGLTATVVGGLFACMLFLA
EEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PISYLVPAYATAPALMYVGLLMLSNVSKLDMNDSVDALSGLVCAVFIVLTGNIVTGIMLG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FTSLVVGRVISGDWRKLNIGTVTISVILIIFYAGGWAI
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]