| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yhbE [C]
Identifier: 167622567
GI number: 167622567
Start: 755497
End: 756474
Strand: Direct
Name: yhbE [C]
Synonym: Shal_0627
Alternate gene names: 167622567
Gene position: 755497-756474 (Clockwise)
Preceding gene: 167622566
Following gene: 167622572
Centisome position: 14.45
GC content: 44.58
Gene sequence:
>978_bases ATGGCCATATTCATGGATCCGCGCGCTCAATGCTCCGAGTTTAAACTCGGATTTATCTTTATTTCTGTCGCAGTTATTTT TTGGGGGGTATTGCCGATAGCACTCAAGCTATCGGGGCTATTTATCGACGCCGTTACCTTAACCTGGTTCCGTTTCTTGG TTGCTCTGGTGGTAGGCTTTGCCATTCAGTATCTAAGTGGCAGCATCAAGCAGTTTAGGGGACTCGATAAAGTGTCTTGG TTAAAAATGACTTTAGCTGGTGTGTTGCTAATTTTTAACTACGTTTCTTTTGTCTATTCGCTTAAGTATCTTGCGCCGGG TTCGGCTCAGCTCAACTTTCAAACCGCGCCTTTCTTTCTGGCCTTTGGTGGGATGTTGTTTTTTAAAGAGCGACTCAATG CAATACAACTCAGTTGTTTCGCGACACTGGGATTAGGCATGTTGATGTTCTTCCATCCTTATTTAGACTTTACTTCGGGG CCGTCAGATGTATGGAAGGGAGTGTTGATCATTCAGTTTTCTGTACTGTCATGGGCAAGTTATGCATTAATCCAAAAGTC GATGATTAAGCGTTTGTCGCCGAATAACATTTTATTGTTTATCTACTTATTTGGCATTTTTGCTATGGCCCCTTTTAGCG ATTTTAGTCAGTTCACTGTAATGGATTCGAGCCAGTGGGCTATCGCGATTTTTTGTGCGATTAATACCGTTATCGCCTAC GGTTGTTTTGGTCAGTCTATGAAGTATTGGCCCACAGGGCAGGTGAGCGCCATGCTGGCATTGAGTCCTGTGATCAGCTT TAGCTTAACTGCGGTGGTGGTAAGTTTAGGTTGGTGGAGTGACATCATCAAGGGGGCGATTATCGACCCGTTATCGTTTA GCGGAATTGTGTTAATTCTGGTATCTGTGATTGCAGTGCAGTTGTCTCCCATCTGGGAGAAACGTAGGGCGTTAAAACCG GTTCAGGTTGCCGCCTAA
Upstream 100 bases:
>100_bases AGTTGCAGGTCAAAGGTCGCACGCTTTATAAGAGAATCGATTAGCCTACTAGACCTAAAGCGACCGATAGGGCAAAATCG CCGATCTTGTTATTTCTTCA
Downstream 100 bases:
>100_bases ACAGCAAGACATGAATAAGCCATCCTCTAATAGGGTGGCTTTTTTATGCGCCTAAAAACGGGGTATGTTTCCGCTGTAAG GTACCGCTCTTGTGTTCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MAIFMDPRAQCSEFKLGFIFISVAVIFWGVLPIALKLSGLFIDAVTLTWFRFLVALVVGFAIQYLSGSIKQFRGLDKVSW LKMTLAGVLLIFNYVSFVYSLKYLAPGSAQLNFQTAPFFLAFGGMLFFKERLNAIQLSCFATLGLGMLMFFHPYLDFTSG PSDVWKGVLIIQFSVLSWASYALIQKSMIKRLSPNNILLFIYLFGIFAMAPFSDFSQFTVMDSSQWAIAIFCAINTVIAY GCFGQSMKYWPTGQVSAMLALSPVISFSLTAVVVSLGWWSDIIKGAIIDPLSFSGIVLILVSVIAVQLSPIWEKRRALKP VQVAA
Sequences:
>Translated_325_residues MAIFMDPRAQCSEFKLGFIFISVAVIFWGVLPIALKLSGLFIDAVTLTWFRFLVALVVGFAIQYLSGSIKQFRGLDKVSW LKMTLAGVLLIFNYVSFVYSLKYLAPGSAQLNFQTAPFFLAFGGMLFFKERLNAIQLSCFATLGLGMLMFFHPYLDFTSG PSDVWKGVLIIQFSVLSWASYALIQKSMIKRLSPNNILLFIYLFGIFAMAPFSDFSQFTVMDSSQWAIAIFCAINTVIAY GCFGQSMKYWPTGQVSAMLALSPVISFSLTAVVVSLGWWSDIIKGAIIDPLSFSGIVLILVSVIAVQLSPIWEKRRALKP VQVAA >Mature_324_residues AIFMDPRAQCSEFKLGFIFISVAVIFWGVLPIALKLSGLFIDAVTLTWFRFLVALVVGFAIQYLSGSIKQFRGLDKVSWL KMTLAGVLLIFNYVSFVYSLKYLAPGSAQLNFQTAPFFLAFGGMLFFKERLNAIQLSCFATLGLGMLMFFHPYLDFTSGP SDVWKGVLIIQFSVLSWASYALIQKSMIKRLSPNNILLFIYLFGIFAMAPFSDFSQFTVMDSSQWAIAIFCAINTVIAYG CFGQSMKYWPTGQVSAMLALSPVISFSLTAVVVSLGWWSDIIKGAIIDPLSFSGIVLILVSVIAVQLSPIWEKRRALKPV QVAA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
Organism=Escherichia coli, GI1789575, Length=282, Percent_Identity=28.0141843971631, Blast_Score=111, Evalue=6e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 36090; Mature: 35958
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIFMDPRAQCSEFKLGFIFISVAVIFWGVLPIALKLSGLFIDAVTLTWFRFLVALVVGF CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIQYLSGSIKQFRGLDKVSWLKMTLAGVLLIFNYVSFVYSLKYLAPGSAQLNFQTAPFFL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH AFGGMLFFKERLNAIQLSCFATLGLGMLMFFHPYLDFTSGPSDVWKGVLIIQFSVLSWAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHEEEHHHHHHH YALIQKSMIKRLSPNNILLFIYLFGIFAMAPFSDFSQFTVMDSSQWAIAIFCAINTVIAY HHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH GCFGQSMKYWPTGQVSAMLALSPVISFSLTAVVVSLGWWSDIIKGAIIDPLSFSGIVLIL HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH VSVIAVQLSPIWEKRRALKPVQVAA HHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AIFMDPRAQCSEFKLGFIFISVAVIFWGVLPIALKLSGLFIDAVTLTWFRFLVALVVGF EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIQYLSGSIKQFRGLDKVSWLKMTLAGVLLIFNYVSFVYSLKYLAPGSAQLNFQTAPFFL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH AFGGMLFFKERLNAIQLSCFATLGLGMLMFFHPYLDFTSGPSDVWKGVLIIQFSVLSWAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHEEEHHHHHHH YALIQKSMIKRLSPNNILLFIYLFGIFAMAPFSDFSQFTVMDSSQWAIAIFCAINTVIAY HHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH GCFGQSMKYWPTGQVSAMLALSPVISFSLTAVVVSLGWWSDIIKGAIIDPLSFSGIVLIL HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH VSVIAVQLSPIWEKRRALKPVQVAA HHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]