| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is metL [H]
Identifier: 167622563
GI number: 167622563
Start: 751123
End: 753516
Strand: Direct
Name: metL [H]
Synonym: Shal_0623
Alternate gene names: 167622563
Gene position: 751123-753516 (Clockwise)
Preceding gene: 167622562
Following gene: 167622564
Centisome position: 14.37
GC content: 48.16
Gene sequence:
>2394_bases ATGGCACGCTGTCACTTACATAAATTTGGTGGCTCAAGTCTTGCGGATGCTGACTGTTACCGTCGCGTTGCTCATATTCT GCTGACTCATGGTCACAGTGATGATTTAGTGGTGGTGTCTGCCGCGGGTAAAAGCACCAACTTCTTGTATAATTTACTTG AGCTAAGTTCCTGTAAACAGTTGTGGCAAGAAGAGCTACAAATGTTGATTAGTTTCCAGCAAAATTTGATAGAGCAGTTG CTCTCAAATGAACAGGCGCGCGCTCTAAGGGAGCGACTCTCTAACGATAAGGCGCAGCTGATCAGCTTGTTATCGCTAGA GTCTATTAGTGATTACCAGAGCAACCAGGTGGTGAGCTTTGGTGAGCGCTGGTCTGCACGTTTATTGGCGGCGCTATTGC GTGAGTCTGGTGTGGCGGCATCCGATGTTGATGCGCGCACACTCTTGATTGCCGATGAGGCTGCGGTACCACAAATTCGC CTGCAGGAATCTCGTCAACGCGTTCATGCCATGACCGAAACGTACCCTAATGAGCGTTTAATTATTACCGGATTCATCTG TGCTAATAACCGTGGCGAGACTTTGCTACTGGGACGCAATGGCTCCGATTTTAGCGCCACCTTGATTGCCAGTTTGGCCG ATATCGAGCGGGTAACTATTTGGACCGATGTAGAGGGCGTGTTTAATGCTGATCCGAATAAGATTAATGATGCTAAGTTA CTCAGTAGCTTGTCATTAGCCGAAGCAAACCGCTTGGCGCACCTAGGCTCTCCGGTGCTGCATAACAGAACTCTACAACC CCTGTTTGATACTCAAGTAAGCCTAGCTGTACGTTCAAGTTATGCATCTCATACAGATTTTACCTTGATCGCACCTAAGA GCTCATCGGCGAGTGCGCCAGTGGTCACTAATCTAAGCAGCGTCGCGCTATTTAACCTTGAGCTTAAGAGTGATTTTAAA CAGCTTATTGAGCTTCTTGAAGAAACCGGCTTAAGTCCGCTGGCCTATTGGGAGCTAGGGCAAGACCGTGTAGAGCTCAC TGTCACCCTAGAGAACCACAAGCAAGTATTGGCATTGCTGGACGTTAACCGTGATGCCTTAGGTGTGAGTGACATTAAGA TCACCGAAGATCTTGGTTTAGTGGCGCTTGTGAGCGCAGATGCAAGCCTGTATCGCCGCGGCTTTGCCAGATTACTCAGC CGTAATGCTAGACCGCTGTTTAATGATGGTATGAGCCTTGTGACCTTGGTGCCACAGGGACAAGTAAACTTGCTCACGCA AAAAGTACACCGTCGCTGCGCCGGTCCTCGAAAACGTATTGGCGTACTCTTGTTAGGGGTGGGCAATATTGGTGAAGCTT GGATTGAACTCTTTAGTGGTGCTAAGTCGGCACTGAATAAAGAGCTTGAAGCTAGCGTCGAGTTGGTCGGATTAGTCAGT TCACGTAAGGCACTGATCAGCGACGAGGGCATCGAGTTGGGCTCGTGGAAGCAGGCCTTTGAAGAGCATGCGACACCTTG GCAGTATAGTCACCTGTTTGATGAAGTGCATGAGCTTGAATGCGATGAAGTGATTGCACTCGATATCAGTGCCAGCGCCG ATCTGACTCTTCAATACCCAGAGTTTTTTGCTCGTGGAATTCATGTTGTCAGTGCAAATAAGCTAGCGGGCTCAGGGCCA CTAACTTTCTATCGAGAGCTGAAACAGCAGTTAGATAACCGCCGTCTATTTTGGCGTTATAACGCCAGTTGCGGTGCCGG TCTACCGGTACAGCATGCATTGAATGATCTGCATAATAGTGGCGATAGCATTGAGGCTGTTGGCGGTATTTTTTCAGGTA CCCTGTGTTGGTTATTTGAAAACTTCGATGCTAAGAAACCTTTCTCTGAGCTAGTCATAGAAGCTAGAGGCTTAGGGATC ACCGAGCCCGATCCGCGTGATGATCTATCGGGTCGAGACATGCAGCGTAAGCTGCTTATTCTGGCTCGTGAAATCGGCTT TGAAATTGAGCTTGAAGATATCGAGCTTAAGTCCTTGGTGCCGGATAATCTTGCTGAGTTGCCGTTAGAGCAATTTTTAT TACGGATAAGTGAACTTGACGCCGACATGCTGCAACAGTTCGTCGCTGCGGCAGAGCAAGATAAAGTGCTGAGATATGTG GCGTCTTTAGATAAGGTCGATGGTGAGCTAAAGGCTGAGGTAGGTATACAGTGGGTCGATATTTCTCATCCTTACGCTAA CTTAACGCCAGGTGATAATGTGTTTGTTATCCGTAGTGAGTTTTATCAAGACAATCCATTGATAATTCGTGGACCTGGGG CTGGCCGCTTAGTGACCGCCGCGGCTGTACAGTCAGACTTAGCGCATATTTGTCGAGATCTGCTGCAAGAATAA
Upstream 100 bases:
>100_bases TATCCGTCTTTCTGTTGGTATCGAAGATGCTGATGATCTTGTTGCCGATATTGAAGCTGCGCTTAATGCCGCAGCCGCTT GTTAATTAAAGGGGTATACG
Downstream 100 bases:
>100_bases TTTTCATTTTAATCAATTGTAAAGGGACTCATTTGAGTCCCTTTTTTGTTTTCAGCCCTAAACCACATTCTTCAGAAAGT AGATATTTTTACGGTCCCAA
Product: bifunctional aspartate kinase II/homoserine dehydrogenase II
Products: NA
Alternate protein names: Aspartokinase II/homoserine dehydrogenase II; AKII-HDII; Aspartokinase; Homoserine dehydrogenase [H]
Number of amino acids: Translated: 797; Mature: 796
Protein sequence:
>797_residues MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYNLLELSSCKQLWQEELQMLISFQQNLIEQL LSNEQARALRERLSNDKAQLISLLSLESISDYQSNQVVSFGERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIR LQESRQRVHAMTETYPNERLIITGFICANNRGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAPVVTNLSSVALFNLELKSDFK QLIELLEETGLSPLAYWELGQDRVELTVTLENHKQVLALLDVNRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLS RNARPLFNDGMSLVTLVPQGQVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWIELFSGAKSALNKELEASVELVGLVS SRKALISDEGIELGSWKQAFEEHATPWQYSHLFDEVHELECDEVIALDISASADLTLQYPEFFARGIHVVSANKLAGSGP LTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNSGDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGI TEPDPRDDLSGRDMQRKLLILAREIGFEIELEDIELKSLVPDNLAELPLEQFLLRISELDADMLQQFVAAAEQDKVLRYV ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQDNPLIIRGPGAGRLVTAAAVQSDLAHICRDLLQE
Sequences:
>Translated_797_residues MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYNLLELSSCKQLWQEELQMLISFQQNLIEQL LSNEQARALRERLSNDKAQLISLLSLESISDYQSNQVVSFGERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIR LQESRQRVHAMTETYPNERLIITGFICANNRGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAPVVTNLSSVALFNLELKSDFK QLIELLEETGLSPLAYWELGQDRVELTVTLENHKQVLALLDVNRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLS RNARPLFNDGMSLVTLVPQGQVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWIELFSGAKSALNKELEASVELVGLVS SRKALISDEGIELGSWKQAFEEHATPWQYSHLFDEVHELECDEVIALDISASADLTLQYPEFFARGIHVVSANKLAGSGP LTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNSGDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGI TEPDPRDDLSGRDMQRKLLILAREIGFEIELEDIELKSLVPDNLAELPLEQFLLRISELDADMLQQFVAAAEQDKVLRYV ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQDNPLIIRGPGAGRLVTAAAVQSDLAHICRDLLQE >Mature_796_residues ARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYNLLELSSCKQLWQEELQMLISFQQNLIEQLL SNEQARALRERLSNDKAQLISLLSLESISDYQSNQVVSFGERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIRL QESRQRVHAMTETYPNERLIITGFICANNRGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKLL SSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAPVVTNLSSVALFNLELKSDFKQ LIELLEETGLSPLAYWELGQDRVELTVTLENHKQVLALLDVNRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLSR NARPLFNDGMSLVTLVPQGQVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWIELFSGAKSALNKELEASVELVGLVSS RKALISDEGIELGSWKQAFEEHATPWQYSHLFDEVHELECDEVIALDISASADLTLQYPEFFARGIHVVSANKLAGSGPL TFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNSGDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGIT EPDPRDDLSGRDMQRKLLILAREIGFEIELEDIELKSLVPDNLAELPLEQFLLRISELDADMLQQFVAAAEQDKVLRYVA SLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQDNPLIIRGPGAGRLVTAAAVQSDLAHICRDLLQE
Specific function: Catalyzes 2 nonconsecutive reactions in the common biosynthetic pathway leading from Asp to diaminopimelate and Lys, to Met, and to Thr and Ile. [C]
COG id: COG0460
COG function: function code E; Homoserine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the homoserine dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1790376, Length=806, Percent_Identity=42.1836228287841, Blast_Score=565, Evalue=1e-162, Organism=Escherichia coli, GI1786183, Length=818, Percent_Identity=29.9511002444988, Blast_Score=318, Evalue=7e-88, Organism=Escherichia coli, GI1790455, Length=298, Percent_Identity=33.5570469798658, Blast_Score=121, Evalue=1e-28, Organism=Saccharomyces cerevisiae, GI6322599, Length=347, Percent_Identity=34.5821325648415, Blast_Score=169, Evalue=2e-42, Organism=Saccharomyces cerevisiae, GI6320893, Length=311, Percent_Identity=23.4726688102894, Blast_Score=84, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001048 - InterPro: IPR005106 - InterPro: IPR001341 - InterPro: IPR018042 - InterPro: IPR011147 - InterPro: IPR001342 - InterPro: IPR019811 - InterPro: IPR016040 [H]
Pfam domain/function: PF00696 AA_kinase; PF00742 Homoserine_dh; PF03447 NAD_binding_3 [H]
EC number: =2.7.2.4; =1.1.1.3 [H]
Molecular weight: Translated: 88070; Mature: 87939
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS01042 HOMOSER_DHGENASE ; PS00324 ASPARTOKINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYNLLELSSCKQ CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH LWQEELQMLISFQQNLIEQLLSNEQARALRERLSNDKAQLISLLSLESISDYQSNQVVSF HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEH GERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIRLQESRQRVHAMTETYPNERL HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEE IITGFICANNRGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL EEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAP HHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC VVTNLSSVALFNLELKSDFKQLIELLEETGLSPLAYWELGQDRVELTVTLENHKQVLALL CCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCEEEEEE DVNRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLSRNARPLFNDGMSLVTLVPQG ECCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCC QVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWIELFSGAKSALNKELEASVELVGLVS CHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH SRKALISDEGIELGSWKQAFEEHATPWQYSHLFDEVHELECDEVIALDISASADLTLQYP CCHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECH EFFARGIHVVSANKLAGSGPLTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNS HHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCC GDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGITEPDPRDDLSGRDMQRKLLI CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH LAREIGFEIELEDIELKSLVPDNLAELPLEQFLLRISELDADMLQQFVAAAEQDKVLRYV HHHHCCCEEEEECEEHHHCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQDNPLIIRGPGAGRLVTA HHHHHCCCCEEHCCCEEEEECCCCCCCCCCCCCEEEEEHHCCCCCCEEEECCCCCCCHHH AAVQSDLAHICRDLLQE HHHHHHHHHHHHHHHCC >Mature Secondary Structure ARCHLHKFGGSSLADADCYRRVAHILLTHGHSDDLVVVSAAGKSTNFLYNLLELSSCKQ CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH LWQEELQMLISFQQNLIEQLLSNEQARALRERLSNDKAQLISLLSLESISDYQSNQVVSF HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEH GERWSARLLAALLRESGVAASDVDARTLLIADEAAVPQIRLQESRQRVHAMTETYPNERL HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEE IITGFICANNRGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL EEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH LSSLSLAEANRLAHLGSPVLHNRTLQPLFDTQVSLAVRSSYASHTDFTLIAPKSSSASAP HHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC VVTNLSSVALFNLELKSDFKQLIELLEETGLSPLAYWELGQDRVELTVTLENHKQVLALL CCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCEEEEEE DVNRDALGVSDIKITEDLGLVALVSADASLYRRGFARLLSRNARPLFNDGMSLVTLVPQG ECCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCC QVNLLTQKVHRRCAGPRKRIGVLLLGVGNIGEAWIELFSGAKSALNKELEASVELVGLVS CHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH SRKALISDEGIELGSWKQAFEEHATPWQYSHLFDEVHELECDEVIALDISASADLTLQYP CCHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECH EFFARGIHVVSANKLAGSGPLTFYRELKQQLDNRRLFWRYNASCGAGLPVQHALNDLHNS HHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCC GDSIEAVGGIFSGTLCWLFENFDAKKPFSELVIEARGLGITEPDPRDDLSGRDMQRKLLI CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH LAREIGFEIELEDIELKSLVPDNLAELPLEQFLLRISELDADMLQQFVAAAEQDKVLRYV HHHHCCCEEEEECEEHHHCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH ASLDKVDGELKAEVGIQWVDISHPYANLTPGDNVFVIRSEFYQDNPLIIRGPGAGRLVTA HHHHHCCCCEEHCCCEEEEECCCCCCCCCCCCCEEEEEHHCCCCCCEEEECCCCCCCHHH AAVQSDLAHICRDLLQE HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6298218; 8346018; 9278503 [H]