| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622532
Identifier: 167622532
GI number: 167622532
Start: 718448
End: 719074
Strand: Direct
Name: 167622532
Synonym: Shal_0592
Alternate gene names: NA
Gene position: 718448-719074 (Clockwise)
Preceding gene: 167622531
Following gene: 167622538
Centisome position: 13.75
GC content: 44.02
Gene sequence:
>627_bases ATGAACTTAGCGATTCTGTATTATGTTTACGATCCTATGTGTAGCTGGTGCTGGGCTTATAGGCCAGCTTGGTTGGTGTT ACAATCAAAGTTGCAAGCAGCTTATCCAGATCTCAATATTGAATATCGATTAGGGGGCTTAGCGCCCGATAGTGATGAGC CCATGCCCGAAGATATGCAGCAATTTTTGCAGCAAACTTGGAATAAAATTGCTTTGCAGTTAGGTACTGAGTTTAACTTT GACTTTTGGAAGAAATGTCAGCCACGTCGCTCTACTTATTCAGCTTGTCGCGCCGCTTTACTGGCTAGGGAGTCAGGCCT TGAGCAAGAGATGTTGCTCGCGATCCAGCGTGCCTACTATTTAGAGGCAAGGAACCCGTCTGATAGTGCTACGTTAATTG AGTTAGCTAAAGGTTTGGGACTTGATAGTCAGCAGTTTGCAACGACGTTGATGAGTGAAGAAAGTAAGGTGAAGCTAGAA GAAGAGATAAGCCGAACAAGGCACCTGCCTATTCAAGGTATCCCCTCATTAGTGTTATTAGTAAATGGTGAGTTTTACGT GATCGAAGTTGATTACCAAGACCCTCAGAGCAGTTATCAACAAATCGGCTCGTTGCTCAGTGAATAA
Upstream 100 bases:
>100_bases ATATTTCAAGAGATATGGTTGGAATGGTCTGAATGGCTAGACATTTTTATCTAGCTAGGTAGTCTAGGAGTCCTCAAATG GACTGGGGAAATATCATTTA
Downstream 100 bases:
>100_bases GGGCTATTCGACACATTTTACTTTGGCGTCTCTGTTTACGGTGAGTTTCAGTACTTTCATATATTGGTCGTGAGTGACAT AGCCGCACCGACCATTGATA
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: Protein-Disulfide Isomerase; Thioredoxin Domain-Containing Protein; Dsba Oxidoreductase; Thioredoxin-Like Fold; Dithiol-Disulfide Isomerase; Protein-Disulfide Isomerase-Like Protein; DsbA Oxidoreductase; Thioredoxin
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MNLAILYYVYDPMCSWCWAYRPAWLVLQSKLQAAYPDLNIEYRLGGLAPDSDEPMPEDMQQFLQQTWNKIALQLGTEFNF DFWKKCQPRRSTYSACRAALLARESGLEQEMLLAIQRAYYLEARNPSDSATLIELAKGLGLDSQQFATTLMSEESKVKLE EEISRTRHLPIQGIPSLVLLVNGEFYVIEVDYQDPQSSYQQIGSLLSE
Sequences:
>Translated_208_residues MNLAILYYVYDPMCSWCWAYRPAWLVLQSKLQAAYPDLNIEYRLGGLAPDSDEPMPEDMQQFLQQTWNKIALQLGTEFNF DFWKKCQPRRSTYSACRAALLARESGLEQEMLLAIQRAYYLEARNPSDSATLIELAKGLGLDSQQFATTLMSEESKVKLE EEISRTRHLPIQGIPSLVLLVNGEFYVIEVDYQDPQSSYQQIGSLLSE >Mature_208_residues MNLAILYYVYDPMCSWCWAYRPAWLVLQSKLQAAYPDLNIEYRLGGLAPDSDEPMPEDMQQFLQQTWNKIALQLGTEFNF DFWKKCQPRRSTYSACRAALLARESGLEQEMLLAIQRAYYLEARNPSDSATLIELAKGLGLDSQQFATTLMSEESKVKLE EEISRTRHLPIQGIPSLVLLVNGEFYVIEVDYQDPQSSYQQIGSLLSE
Specific function: Unknown
COG id: COG3531
COG function: function code O; Predicted protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23880; Mature: 23880
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLAILYYVYDPMCSWCWAYRPAWLVLQSKLQAAYPDLNIEYRLGGLAPDSDEPMPEDMQ CCEEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH QFLQQTWNKIALQLGTEFNFDFWKKCQPRRSTYSACRAALLARESGLEQEMLLAIQRAYY HHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LEARNPSDSATLIELAKGLGLDSQQFATTLMSEESKVKLEEEISRTRHLPIQGIPSLVLL EECCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEE VNGEFYVIEVDYQDPQSSYQQIGSLLSE ECCCEEEEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure MNLAILYYVYDPMCSWCWAYRPAWLVLQSKLQAAYPDLNIEYRLGGLAPDSDEPMPEDMQ CCEEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH QFLQQTWNKIALQLGTEFNFDFWKKCQPRRSTYSACRAALLARESGLEQEMLLAIQRAYY HHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LEARNPSDSATLIELAKGLGLDSQQFATTLMSEESKVKLEEEISRTRHLPIQGIPSLVLL EECCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEE VNGEFYVIEVDYQDPQSSYQQIGSLLSE ECCCEEEEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA