| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yxeI [H]
Identifier: 167622531
GI number: 167622531
Start: 716675
End: 717793
Strand: Direct
Name: yxeI [H]
Synonym: Shal_0591
Alternate gene names: 167622531
Gene position: 716675-717793 (Clockwise)
Preceding gene: 167622530
Following gene: 167622532
Centisome position: 13.71
GC content: 45.4
Gene sequence:
>1119_bases ATGAATACCAACCGGTATAAGATTGAAATCATGAAAAAATCACTACTCGCTTTACTTCTAACCTCTGCTTTCAGTTATCA CGCAAGTGCCTGTACTGGCATTACCCTATCAACCACAGACAATGATCAGGTTCAGGCTCGCACCATAGAGTGGGGCCATA GTGATCTCAACAGCAAGCTTGTTATCTCGCCTCGTAATCACCAATACACTTCGACTATGCCCGATCAGCAGCAAGGTCTC ACCTGGAAGAGTCAATATGGCTTTGCTGGGATCTCGGTGAGTGACGATCGCTTTATTGCCGAGGGAATTAACGAGAAAGG ACTGACTGCCGGGTTATTCTATTTTCGCAACTATGGCTCTCTGGCCAAGTATGACCCTAAGCAGACAGCAAACAACATTA CCGATATGGACTTTGTGCGTTGGATGTTAACCCAGTTTGAAACCGTTGCCGAGGTCGAGGCGGCATTAGATAAAATTAAG ATTGTCACCGTTTATTTTGATCAGCAAGGTAACGCCTCGCCGACGGCGCACTGGCGCGTGTCTGATAAGCAGGGCAATAG CATTGTGATTGAAATCATGGATCACGGCAAAATCAATATTCATAAGAACACGGCTAAGGTGCTAACCAACTCGCCAGATT ACAACTGGCAGGTGACCAACCTTAATAATTATATCAATCTGCATCCTGGGATCAGCCCACCTCAGAAGATTAATGGTGTA GAGGCACAATCTTTTGGTGTTGGCTCTAACTTTGTTGGTTTACCGGGAGATATTTCACCGCCATCGCGATTCGTGCGTGC AGCGTTTTACGTGAATACTGCGCCTAAGTTGAATACTGCCGAACAAGCGGTTTCACAGGCGTTCCATATCTTAAATAACT TCGATATTCCCATTGGCAGTGAGTTTAACGATAAGTCTCATATCCCAGAGCTGCCCAGTGCAACGCAGTGGACCTCGGTT ATCGATCAGAGTCATGGGTTACTGTTCTATAAGACCATGCATGACAGCACGATTAAGCGAGTCGATCTGAAGCAGTTAGA TTTTACCGTTAAGCAGGAACGTAAACAGAAGTTAGACAGTGGTAAGTTTAGCTATCAAGAGGTAGGCGTAAGCAATTAA
Upstream 100 bases:
>100_bases GACTTAAGATTTTGTCATTTTTGCTTTTCGGGTGTACCTTAACTTGTCGGATAGCAATCGTTCAAATAGGATTGGTTTTA GCTATCTTCTTTTGGCTTAG
Downstream 100 bases:
>100_bases TTATCGCGCTTGTCCCCACTTGATAAGAAGCCCTGACATAAATGCCAGGGCTTCTTGGTTTCTTGCTAATTATTTATAGC CTTTGTTAGCTACAGAGTAA
Product: choloylglycine hydrolase
Products: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholanate; glycine
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MNTNRYKIEIMKKSLLALLLTSAFSYHASACTGITLSTTDNDQVQARTIEWGHSDLNSKLVISPRNHQYTSTMPDQQQGL TWKSQYGFAGISVSDDRFIAEGINEKGLTAGLFYFRNYGSLAKYDPKQTANNITDMDFVRWMLTQFETVAEVEAALDKIK IVTVYFDQQGNASPTAHWRVSDKQGNSIVIEIMDHGKINIHKNTAKVLTNSPDYNWQVTNLNNYINLHPGISPPQKINGV EAQSFGVGSNFVGLPGDISPPSRFVRAAFYVNTAPKLNTAEQAVSQAFHILNNFDIPIGSEFNDKSHIPELPSATQWTSV IDQSHGLLFYKTMHDSTIKRVDLKQLDFTVKQERKQKLDSGKFSYQEVGVSN
Sequences:
>Translated_372_residues MNTNRYKIEIMKKSLLALLLTSAFSYHASACTGITLSTTDNDQVQARTIEWGHSDLNSKLVISPRNHQYTSTMPDQQQGL TWKSQYGFAGISVSDDRFIAEGINEKGLTAGLFYFRNYGSLAKYDPKQTANNITDMDFVRWMLTQFETVAEVEAALDKIK IVTVYFDQQGNASPTAHWRVSDKQGNSIVIEIMDHGKINIHKNTAKVLTNSPDYNWQVTNLNNYINLHPGISPPQKINGV EAQSFGVGSNFVGLPGDISPPSRFVRAAFYVNTAPKLNTAEQAVSQAFHILNNFDIPIGSEFNDKSHIPELPSATQWTSV IDQSHGLLFYKTMHDSTIKRVDLKQLDFTVKQERKQKLDSGKFSYQEVGVSN >Mature_372_residues MNTNRYKIEIMKKSLLALLLTSAFSYHASACTGITLSTTDNDQVQARTIEWGHSDLNSKLVISPRNHQYTSTMPDQQQGL TWKSQYGFAGISVSDDRFIAEGINEKGLTAGLFYFRNYGSLAKYDPKQTANNITDMDFVRWMLTQFETVAEVEAALDKIK IVTVYFDQQGNASPTAHWRVSDKQGNSIVIEIMDHGKINIHKNTAKVLTNSPDYNWQVTNLNNYINLHPGISPPQKINGV EAQSFGVGSNFVGLPGDISPPSRFVRAAFYVNTAPKLNTAEQAVSQAFHILNNFDIPIGSEFNDKSHIPELPSATQWTSV IDQSHGLLFYKTMHDSTIKRVDLKQLDFTVKQERKQKLDSGKFSYQEVGVSN
Specific function: Unknown
COG id: COG3049
COG function: function code M; Penicillin V acylase and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C59 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003199 [H]
Pfam domain/function: PF02275 CBAH [H]
EC number: 3.5.1.24
Molecular weight: Translated: 41696; Mature: 41696
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTNRYKIEIMKKSLLALLLTSAFSYHASACTGITLSTTDNDQVQARTIEWGHSDLNSKL CCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCEEEEEEECCCCCCCCEE VISPRNHQYTSTMPDQQQGLTWKSQYGFAGISVSDDRFIAEGINEKGLTAGLFYFRNYGS EECCCCCCCCCCCCCHHHCCEEECCCCEEEEEECCCCHHHCCCCCCCCEEHHHHHHCCCC LAKYDPKQTANNITDMDFVRWMLTQFETVAEVEAALDKIKIVTVYFDQQGNASPTAHWRV CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCEEEEE SDKQGNSIVIEIMDHGKINIHKNTAKVLTNSPDYNWQVTNLNNYINLHPGISPPQKINGV ECCCCCEEEEEEECCCEEEEECCHHEEEECCCCCCEEEEECCCEEEECCCCCCHHHCCCC EAQSFGVGSNFVGLPGDISPPSRFVRAAFYVNTAPKLNTAEQAVSQAFHILNNFDIPIGS CCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC EFNDKSHIPELPSATQWTSVIDQSHGLLFYKTMHDSTIKRVDLKQLDFTVKQERKQKLDS CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHCC GKFSYQEVGVSN CCCCHHHCCCCC >Mature Secondary Structure MNTNRYKIEIMKKSLLALLLTSAFSYHASACTGITLSTTDNDQVQARTIEWGHSDLNSKL CCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHCCEEEECCCCCCEEEEEEECCCCCCCCEE VISPRNHQYTSTMPDQQQGLTWKSQYGFAGISVSDDRFIAEGINEKGLTAGLFYFRNYGS EECCCCCCCCCCCCCHHHCCEEECCCCEEEEEECCCCHHHCCCCCCCCEEHHHHHHCCCC LAKYDPKQTANNITDMDFVRWMLTQFETVAEVEAALDKIKIVTVYFDQQGNASPTAHWRV CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCEEEEE SDKQGNSIVIEIMDHGKINIHKNTAKVLTNSPDYNWQVTNLNNYINLHPGISPPQKINGV ECCCCCEEEEEEECCCEEEEECCHHEEEECCCCCCEEEEECCCEEEECCCCCCHHHCCCC EAQSFGVGSNFVGLPGDISPPSRFVRAAFYVNTAPKLNTAEQAVSQAFHILNNFDIPIGS CCCCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC EFNDKSHIPELPSATQWTSVIDQSHGLLFYKTMHDSTIKRVDLKQLDFTVKQERKQKLDS CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHCC GKFSYQEVGVSN CCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oylglycine; H2O
Specific reaction: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oylglycine + H2O = 3alpha,7alpha,12alpha-trihydroxy-5beta-cholanate + glycine
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]