Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 167622520

GI number: 167622520

Start: 696671

End: 697645

Strand: Direct

Name: rbsC [H]

Synonym: Shal_0580

Alternate gene names: 167622520

Gene position: 696671-697645 (Clockwise)

Preceding gene: 167622519

Following gene: 167622521

Centisome position: 13.33

GC content: 48.62

Gene sequence:

>975_bases
ATGAGTCAGTCAATTACAGCGCAGCCATTTTATAAGCGTATTAACAAAGAGTGGTTGATTGAGCAAAAATCGCTTATAGC
CCTGTTTAGTCTTATTTTTGTGGTCTCTTTGCTGAGCCCTAACTTCTTAACCGTTGATAACTTCCTTAATATTTTACGCC
AAACTTCGATTAACGGAATTATTGCCGTTGGCATGACTATCGTTATTCTGACTGCGGGTATCGATTTAAGTGTCGGTTCG
GTTTTGGCCCTAAGTGGCGCAATTGTCGCGACCTTAATTGGCATGGATGTGCCAGTCATGATAGCGCTGCCAGTGGCTTT
GATTGCTGGCGCGGCGTTAGGTGCTATCAGCGGCATTATCGTTGCCAAAGGTAAGGTGCAGGCCTTTATCGCAACGTTAG
TGACCATGACACTGCTGCGCGGCGTGACAATGGTATATACCGATGGTCGCCCGGTGCCGACAGGTTTTAGCGAAACTGCT
GATAGCTTTACATGGCTGGGAACGGGCTATGTGCTGGGTATTCCTGTGCCAGTTTGGTTGATGGCTATCGTGTTTACTGG
TGCATGGTACTTGCTTAACCACACCCGCTTTGGTCGTTATATCTATGCCGTGGGTGGCAATGAGTCTGCAGCGCGCTTAT
CGGGTATTGCGGTTGATAAGGTCAAGATTGCTGCCTACGCCATCTGTGGTTCAATGGCCGCACTGGCTGGCATTATCGTG
ACGGCGCGGCTGTCTTCGGCGCAGCCGACCGCGGGTATGGGCTATGAGCTTGATGCGATTGCAGCCGTGGTCTTAGGCGG
AACCAGCTTAATGGGTGGCAAGGGTCGTATCGTCGGTACCTTAATTGGTGCACTGATTATTGGATTCTTAAATAATGCGT
TAAACCTGCTGGATGTCTCGTCTTATTATCAGATGATTGCTAAAGCCAGCGTCATCTTGTTAGCGGTACTTATCGACACT
AAGCAAAAAGCGTAA

Upstream 100 bases:

>100_bases
TGCACCAAGGCCAGATCAGTGGCGAATTTGATGCCGCCCAAGCAGATCAAGAAACTATTCTTGCTTGTGCAGTCGGTAAA
ACATTAAACAAGGATATTGC

Downstream 100 bases:

>100_bases
TTTCTGATTAGCAGGGCGTTTGTCGTTCCTGCTTTTGTTCTGAAAGTTCTTATCATTTTAGAGCCTACTATCATAAAGGC
TGGATATTGAAAGGCGATTA

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSQSITAQPFYKRINKEWLIEQKSLIALFSLIFVVSLLSPNFLTVDNFLNILRQTSINGIIAVGMTIVILTAGIDLSVGS
VLALSGAIVATLIGMDVPVMIALPVALIAGAALGAISGIIVAKGKVQAFIATLVTMTLLRGVTMVYTDGRPVPTGFSETA
DSFTWLGTGYVLGIPVPVWLMAIVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIVGTLIGALIIGFLNNALNLLDVSSYYQMIAKASVILLAVLIDT
KQKA

Sequences:

>Translated_324_residues
MSQSITAQPFYKRINKEWLIEQKSLIALFSLIFVVSLLSPNFLTVDNFLNILRQTSINGIIAVGMTIVILTAGIDLSVGS
VLALSGAIVATLIGMDVPVMIALPVALIAGAALGAISGIIVAKGKVQAFIATLVTMTLLRGVTMVYTDGRPVPTGFSETA
DSFTWLGTGYVLGIPVPVWLMAIVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIVGTLIGALIIGFLNNALNLLDVSSYYQMIAKASVILLAVLIDT
KQKA
>Mature_323_residues
SQSITAQPFYKRINKEWLIEQKSLIALFSLIFVVSLLSPNFLTVDNFLNILRQTSINGIIAVGMTIVILTAGIDLSVGSV
LALSGAIVATLIGMDVPVMIALPVALIAGAALGAISGIIVAKGKVQAFIATLVTMTLLRGVTMVYTDGRPVPTGFSETAD
SFTWLGTGYVLGIPVPVWLMAIVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIVT
ARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIVGTLIGALIIGFLNNALNLLDVSSYYQMIAKASVILLAVLIDTK
QKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=68.3229813664596, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1790524, Length=285, Percent_Identity=45.6140350877193, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=38.3647798742138, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=38.2352941176471, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1789992, Length=373, Percent_Identity=36.4611260053619, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=39.1608391608392, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1788471, Length=333, Percent_Identity=36.6366366366366, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693214, Length=249, Percent_Identity=40.1606425702811, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=34.965034965035, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=30.1369863013699, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33845; Mature: 33714

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSITAQPFYKRINKEWLIEQKSLIALFSLIFVVSLLSPNFLTVDNFLNILRQTSINGI
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHH
IAVGMTIVILTAGIDLSVGSVLALSGAIVATLIGMDVPVMIALPVALIAGAALGAISGII
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHE
VAKGKVQAFIATLVTMTLLRGVTMVYTDGRPVPTGFSETADSFTWLGTGYVLGIPVPVWL
EECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHCCCEEEECCCEEEECCHHHHH
MAIVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIVGTLIGALIIGFLNNALNLLDVS
HHCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYYQMIAKASVILLAVLIDTKQKA
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SQSITAQPFYKRINKEWLIEQKSLIALFSLIFVVSLLSPNFLTVDNFLNILRQTSINGI
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHH
IAVGMTIVILTAGIDLSVGSVLALSGAIVATLIGMDVPVMIALPVALIAGAALGAISGII
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHE
VAKGKVQAFIATLVTMTLLRGVTMVYTDGRPVPTGFSETADSFTWLGTGYVLGIPVPVWL
EECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHCCCEEEECCCEEEECCHHHHH
MAIVFTGAWYLLNHTRFGRYIYAVGGNESAARLSGIAVDKVKIAAYAICGSMAALAGIIV
HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TARLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIVGTLIGALIIGFLNNALNLLDVS
HHCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYYQMIAKASVILLAVLIDTKQKA
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]