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The map label for this gene is psrC [H]

Identifier: 167622512

GI number: 167622512

Start: 687813

End: 688760

Strand: Direct

Name: psrC [H]

Synonym: Shal_0572

Alternate gene names: 167622512

Gene position: 687813-688760 (Clockwise)

Preceding gene: 167622511

Following gene: 167622513

Centisome position: 13.16

GC content: 45.78

Gene sequence:

>948_bases
ATGGACGGAAATATTGAGTTTACAATGGGGCTTTCCGAGGGCCTTGCATGGCCTTGGCCCATTGCTGTTTACTTGTTCTT
TGCCGGGATCTCGGGTGGTGCGCTAGCCACTGCGCTATTCCTGCGATTCTACAAAAAGCAGACAACCAATACGCCATTTT
ATAAAGCGGCAGCATTGATCTCATTGGTAACCATCAGCTTAGGTATGTTGTGTTTGGTTCTCGATTTGACCAATCCGCTG
TTCTTCTGGCGAATTTTAGTTTTCTATAACCTAAATTCGGTAATGTCTATCGGTGTTATCGCGCTGTCGGTCTACATCCC
GCTGGTCGCATTAATTTGCCTATACGCATTCGAAGAAGAGATCCGCTCGGTACCTGCGCTTAAAATGCTTGTACCTTTGG
TTGATAAGCTTCAGGGCATTCGTCGTCCATGTGAAGTCACTGTACTGGTACTAGCACTTGCTGTCTGTGCTTATACAGGC
TTCCTTATCTCGGCTTTGATCCGTTTTCCTATCATCAACACCTCTGTACTACCGGCACTATTTATAGCCTCTGGTATCTC
AGCGGGTGCTGCAGCAGCCAAAATGCTTGCGGTATCGATGTTTAAAGAAGACTTACATAGCCAAGATATGAAGTTACTGC
ACGGTGCAGAATGGCCAATCATGATTGCTGAAATACTATTCATCTTCATGATAGTGACATCACTAATGACGGGTAATGCG
GGAGCACAGAGTGCATTTACTGCTTTCCATACCGGAGAGTGGGCTGCGGTGTTCTGGTTTGGTGTTGTGGGTCTAGGTTT
TGGTGGTCCACTATTGCTTAACTTTGCTACGGGTAAGTCATTTAGCCATTCAGCTAAAGCATTCTATCTATCGGGTGTAT
GCGCTGTTACCGGCATGATGTGTCTGCGTATGTTTATCCTGTACGCAGGTCAAAACTTTGCTATCTAA

Upstream 100 bases:

>100_bases
GTAAGCTATTACGAGTTAAAGACTCTGTGCGTATTAAGCCAGGGTTTGGTACTGAACCAAGCTTACGTTACATACCTATT
GTTAAGCAGGGAGTATAGAT

Downstream 100 bases:

>100_bases
CCTTAGGGTCGGTAGCTGAGTTCAATTGGTTCGCTCCTAATACGCCGTCCCTGCAGGGTAGGTATTAGGAGTCGGATCTG
TTGAAATCATATACTCTCAC

Product: polysulfide reductase NrfD

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: Sulfur reductase chain C [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDGNIEFTMGLSEGLAWPWPIAVYLFFAGISGGALATALFLRFYKKQTTNTPFYKAAALISLVTISLGMLCLVLDLTNPL
FFWRILVFYNLNSVMSIGVIALSVYIPLVALICLYAFEEEIRSVPALKMLVPLVDKLQGIRRPCEVTVLVLALAVCAYTG
FLISALIRFPIINTSVLPALFIASGISAGAAAAKMLAVSMFKEDLHSQDMKLLHGAEWPIMIAEILFIFMIVTSLMTGNA
GAQSAFTAFHTGEWAAVFWFGVVGLGFGGPLLLNFATGKSFSHSAKAFYLSGVCAVTGMMCLRMFILYAGQNFAI

Sequences:

>Translated_315_residues
MDGNIEFTMGLSEGLAWPWPIAVYLFFAGISGGALATALFLRFYKKQTTNTPFYKAAALISLVTISLGMLCLVLDLTNPL
FFWRILVFYNLNSVMSIGVIALSVYIPLVALICLYAFEEEIRSVPALKMLVPLVDKLQGIRRPCEVTVLVLALAVCAYTG
FLISALIRFPIINTSVLPALFIASGISAGAAAAKMLAVSMFKEDLHSQDMKLLHGAEWPIMIAEILFIFMIVTSLMTGNA
GAQSAFTAFHTGEWAAVFWFGVVGLGFGGPLLLNFATGKSFSHSAKAFYLSGVCAVTGMMCLRMFILYAGQNFAI
>Mature_315_residues
MDGNIEFTMGLSEGLAWPWPIAVYLFFAGISGGALATALFLRFYKKQTTNTPFYKAAALISLVTISLGMLCLVLDLTNPL
FFWRILVFYNLNSVMSIGVIALSVYIPLVALICLYAFEEEIRSVPALKMLVPLVDKLQGIRRPCEVTVLVLALAVCAYTG
FLISALIRFPIINTSVLPALFIASGISAGAAAAKMLAVSMFKEDLHSQDMKLLHGAEWPIMIAEILFIFMIVTSLMTGNA
GAQSAFTAFHTGEWAAVFWFGVVGLGFGGPLLLNFATGKSFSHSAKAFYLSGVCAVTGMMCLRMFILYAGQNFAI

Specific function: Component of the phosphorylative electron transport system with polysulfide as the terminal acceptor [H]

COG id: COG3301

COG function: function code P; Formate-dependent nitrite reductase, membrane component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI1790509, Length=315, Percent_Identity=35.2380952380952, Blast_Score=171, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 34155; Mature: 34155

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGNIEFTMGLSEGLAWPWPIAVYLFFAGISGGALATALFLRFYKKQTTNTPFYKAAALI
CCCCEEEEEEHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SLVTISLGMLCLVLDLTNPLFFWRILVFYNLNSVMSIGVIALSVYIPLVALICLYAFEEE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRSVPALKMLVPLVDKLQGIRRPCEVTVLVLALAVCAYTGFLISALIRFPIINTSVLPAL
HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FIASGISAGAAAAKMLAVSMFKEDLHSQDMKLLHGAEWPIMIAEILFIFMIVTSLMTGNA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
GAQSAFTAFHTGEWAAVFWFGVVGLGFGGPLLLNFATGKSFSHSAKAFYLSGVCAVTGMM
CCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
CLRMFILYAGQNFAI
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MDGNIEFTMGLSEGLAWPWPIAVYLFFAGISGGALATALFLRFYKKQTTNTPFYKAAALI
CCCCEEEEEEHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SLVTISLGMLCLVLDLTNPLFFWRILVFYNLNSVMSIGVIALSVYIPLVALICLYAFEEE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRSVPALKMLVPLVDKLQGIRRPCEVTVLVLALAVCAYTGFLISALIRFPIINTSVLPAL
HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FIASGISAGAAAAKMLAVSMFKEDLHSQDMKLLHGAEWPIMIAEILFIFMIVTSLMTGNA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
GAQSAFTAFHTGEWAAVFWFGVVGLGFGGPLLLNFATGKSFSHSAKAFYLSGVCAVTGMM
CCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
CLRMFILYAGQNFAI
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1597189; 14500908 [H]