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The map label for this gene is nrfC [H]

Identifier: 167622511

GI number: 167622511

Start: 687100

End: 687810

Strand: Direct

Name: nrfC [H]

Synonym: Shal_0571

Alternate gene names: 167622511

Gene position: 687100-687810 (Clockwise)

Preceding gene: 167622510

Following gene: 167622512

Centisome position: 13.15

GC content: 46.27

Gene sequence:

>711_bases
GTGAGTGAAAATATAGAGAGACGGAGGTTCCTTAAGTGCTTAGGAGCCAGCTCTTTGATAATAGCGCCCTTAGGGTGCAG
TTCTGTCAAAGAGGGTGAGTCAGATGCAAACAAGCCCCATTATGCGATGGTGTTTGATCAACATAAATGTACCGGCTGCG
GCGAGTGTAAGGAGGCCTGTAATTTAGCCAACAACTTACCAGAAGGTAAATCTAGGCTGTTGATGGAACAGCATTCTGGT
GCGGTAGAAGGTCAGCCTTGTCCACACTGCGGTAAAACAGAAGAATGTGGTTGTGAACGTAAGTTTGTCCGCGTGTCGTG
TCAACAGTGTAAGAATGCTCCATGTGTCACCGTATGCCCTACAGGCGCGGCGCACCGTGATGAGAAGACTGGCATTGTGA
CCATGGACGCGAGTAAGTGTGCTGGTTGTAAGTACTGTATTGCGGCTTGTCCATACGATGCGCGTTTTATTAATAAAGAA
ACCGATGTCGCTGACAACTGTGATTTTTGCTTGAATAGCAAACTTGCCATTGGTGAGCTACCTGCCTGTGTGCAGAAGTG
CCGTTATGATGCACTGATTTTTGGTGATGTTAACGATCCGACATCCTATATCAGTAAGCTATTACGAGTTAAAGACTCTG
TGCGTATTAAGCCAGGGTTTGGTACTGAACCAAGCTTACGTTACATACCTATTGTTAAGCAGGGAGTATAG

Upstream 100 bases:

>100_bases
CAAAAAATAGCTAATCGTTCAGTGGCTGCATCTGAGTAGAGTCACGTAAACCTAATAAGTATAAATATATCAGCAAAATA
GCTGATAGCTGGAGGATGCT

Downstream 100 bases:

>100_bases
ATATGGACGGAAATATTGAGTTTACAATGGGGCTTTCCGAGGGCCTTGCATGGCCTTGGCCCATTGCTGTTTACTTGTTC
TTTGCCGGGATCTCGGGTGG

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQHKCTGCGECKEACNLANNLPEGKSRLLMEQHSG
AVEGQPCPHCGKTEECGCERKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKE
TDVADNCDFCLNSKLAIGELPACVQKCRYDALIFGDVNDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKQGV

Sequences:

>Translated_236_residues
MSENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQHKCTGCGECKEACNLANNLPEGKSRLLMEQHSG
AVEGQPCPHCGKTEECGCERKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKE
TDVADNCDFCLNSKLAIGELPACVQKCRYDALIFGDVNDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKQGV
>Mature_235_residues
SENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQHKCTGCGECKEACNLANNLPEGKSRLLMEQHSGA
VEGQPCPHCGKTEECGCERKFVRVSCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKET
DVADNCDFCLNSKLAIGELPACVQKCRYDALIFGDVNDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKQGV

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=226, Percent_Identity=42.9203539823009, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI226510944, Length=197, Percent_Identity=41.1167512690355, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1787872, Length=201, Percent_Identity=31.8407960199005, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787122, Length=201, Percent_Identity=30.8457711442786, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789370, Length=225, Percent_Identity=28.4444444444444, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787749, Length=162, Percent_Identity=29.0123456790123, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790326, Length=158, Percent_Identity=27.2151898734177, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787740, Length=96, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787963, Length=179, Percent_Identity=29.0502793296089, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787478, Length=96, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367245, Length=158, Percent_Identity=29.746835443038, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788811, Length=201, Percent_Identity=25.8706467661692, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25700; Mature: 25569

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQHKCTGCGECKEAC
CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
NLANNLPEGKSRLLMEQHSGAVEGQPCPHCGKTEECGCERKFVRVSCQQCKNAPCVTVCP
HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
TGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKETDVADNCDFCLNSKLAIGEL
CCCCCCCCCCCEEEECCHHHCCCHHHHHCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCHH
PACVQKCRYDALIFGDVNDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKQGV
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCEEECCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SENIERRRFLKCLGASSLIIAPLGCSSVKEGESDANKPHYAMVFDQHKCTGCGECKEAC
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
NLANNLPEGKSRLLMEQHSGAVEGQPCPHCGKTEECGCERKFVRVSCQQCKNAPCVTVCP
HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
TGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKETDVADNCDFCLNSKLAIGEL
CCCCCCCCCCCEEEECCHHHCCCHHHHHCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCHH
PACVQKCRYDALIFGDVNDPTSYISKLLRVKDSVRIKPGFGTEPSLRYIPIVKQGV
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCEEECCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]