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The map label for this gene is ccmF [H]

Identifier: 167622490

GI number: 167622490

Start: 661411

End: 663387

Strand: Reverse

Name: ccmF [H]

Synonym: Shal_0550

Alternate gene names: 167622490

Gene position: 663387-661411 (Counterclockwise)

Preceding gene: 167622505

Following gene: 167622489

Centisome position: 12.69

GC content: 47.4

Gene sequence:

>1977_bases
ATGATCCCAGAGTTAGGACTTATTTTCCTTATCATTAGCACAGTCACTGCTGTGTTACTTGCGTTTATTCCGCTCTATGC
GTCATATACTAAAAACCATTATTTATTTAGTTATGTAAAAACATTAACCGCATTAATGACGGTCACCATTAGCGCTTCTA
TATTATGTTTGCTTATTTCATTTTTACTCGATGACTTCTCGGTTGCCTATGTTGCCAACCATTCCAATACGCAATTAGCC
ACCCTATATAAAGTCGCCGCGGTATGGGGTAGCCATGAAGGCTCAATGCTGTTTTGGGTGGTATCGATAGCCATTTGGGG
CTGTTTGATTGTGTTCTCATCGCGCTACCAAGATCCACTGTTTATTGGCCGCATGATTGCCATCTTGGCATTTGTTATTG
CCGGCTTTAACTTATTCATGCTGTTTACCTCTAACCCCTTTGCGCGCTTGCTGCCAAACTTCCCGGTTGAAGGTCGTGAC
CTTAACCCAATCTTGCAAGACATAGGCCTTATCTTCCATCCGCCGATGTTGTTCTTAGGCTATGTTGGCTTAACCATCAC
CTTTGCCGCCGCGATTGCGGCGCTACTGGGGGGCAAGTTTACTCAACAACATGCTGGCTATTTGCGTCCTTGGGTGCTTA
TGGCCTGGGTCTTTTTAACTGGTGGTAATGCCTTTGGCTCATGGTGGGCCTATAACGAACTTGGCTGGGGCGGATGGTGG
TTCTGGGATCCGGTGGAAAACGCCTCGTTTATTCCCTGGTTGGTCTCCACTGCATTACTGCACAGCGTGGTACTGAGTCA
GCAACGTAGCAGTTTTAAGATCACCACCCTGTTGCTGTGTTTACTGGCATTCTCATTGAGCTTATTAGGCACCTTCTTAG
TGCGCTCAGGTATCGTACAATCGGTACACGCCTTTGCGTCAGACCCGACTCGCGGCATGTCAATTCTATTCCTATTGGGT
GTTTTTGTGTGTGGCGCCTTAACCCTGTTTGCCTTAAAGGCTCATTTGATTAAGTCTAAGTCTGACTTTGCCCTCATCTC
ACGAGATAGCGTGATGTTGCTCGGCAACATCGTCTTAATCGTGGCAGCTATCTCAGTGCTACTCGGCACCTTCTATCCAC
TGCTATTCGAGCTATTAAATCTAGGTACCCTATCTGTTGGCGCGCCTTATTTTAATAGTATGTTCGTGCCACTGACCTTT
GTCGCCGTATTGCTCATGGGCGCTGCGCCGCTTATTAAGTGGCAACAACAGACGTTAAATAGCTTATACCCACTACTTGG
ATTATTTGCCGCGGCCGCAGTGATAGGTGTGCTGGTCGCAATACAAACTCGTGATGGCTTTAACCCTTGGGTATGGATTG
GTGCCACTTCAGCTAGCTGGATATTGCTAACTCTTGGCTACTTAATGTTTAACCTACGCCAGCAAGGATTAGCCGTTATC
GCTAACAAGGCTGCCATGTTGATCGCTCACCTTGGTGTGGCTGTCACAATTATCGGCGCTACAGCCGTATCCAACTTTGA
AACGCAGGAGTTACTCAGAATGGGGCCGGGGCAAGGCAAGGTCGTTGCTGGATACACCTTTGTGTATGAAGACACCGTTG
ATGTGGATGCCACGAGTTATACCGCGATTCAGGCTAACATTCGCGTCACCGATAGTGATGATAACTTTATCGGTTATATC
ACCCCACAGCGCCAAACCTTTAAGACTAACGCCATGGAGACGACTCAAGCGGGCATTATGCGTAACTTAGCGCGCGATCT
ATATGTCTCCAGTGGCCAACAATTGAGCGAGACTGAATACTTGGTACGTATTAGCCACAAACCACTGGCGTGTTGGCTCT
GGATTGGTGGCTTGATGATGATGTTTGGCGGCACTATTGCGGCTTTTTCAGGCTTACATAACCTCCGTCAGCAAAAAGCA
AAGGCTCACTCCTCGTCCTCACAAGTCACATCTAAGTATACCGAGGAATTAGCATGA

Upstream 100 bases:

>100_bases
AATTCAAAATCAAGCAATAGTGAAAAGCCAATTAACAAAGCATAAATTTCACACAGGCTTTTTGAACTTTTAAACGTAAA
CAAATAGAGAAGTTAATAAG

Downstream 100 bases:

>100_bases
GCAAAGCATACACGTCGACGTTAATGCGCTTACTTGCAGGCCTAGCCATATTGCTTTGCATAAGCATCTCTGCGCAAGCG
GCGAGCGATAAAATCCATTA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLISFLLDDFSVAYVANHSNTQLA
TLYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPLFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPVEGRD
LNPILQDIGLIFHPPMLFLGYVGLTITFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
FWDPVENASFIPWLVSTALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQSVHAFASDPTRGMSILFLLG
VFVCGALTLFALKAHLIKSKSDFALISRDSVMLLGNIVLIVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSMFVPLTF
VAVLLMGAAPLIKWQQQTLNSLYPLLGLFAAAAVIGVLVAIQTRDGFNPWVWIGATSASWILLTLGYLMFNLRQQGLAVI
ANKAAMLIAHLGVAVTIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTVDVDATSYTAIQANIRVTDSDDNFIGYI
TPQRQTFKTNAMETTQAGIMRNLARDLYVSSGQQLSETEYLVRISHKPLACWLWIGGLMMMFGGTIAAFSGLHNLRQQKA
KAHSSSSQVTSKYTEELA

Sequences:

>Translated_658_residues
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLISFLLDDFSVAYVANHSNTQLA
TLYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPLFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPVEGRD
LNPILQDIGLIFHPPMLFLGYVGLTITFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
FWDPVENASFIPWLVSTALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQSVHAFASDPTRGMSILFLLG
VFVCGALTLFALKAHLIKSKSDFALISRDSVMLLGNIVLIVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSMFVPLTF
VAVLLMGAAPLIKWQQQTLNSLYPLLGLFAAAAVIGVLVAIQTRDGFNPWVWIGATSASWILLTLGYLMFNLRQQGLAVI
ANKAAMLIAHLGVAVTIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTVDVDATSYTAIQANIRVTDSDDNFIGYI
TPQRQTFKTNAMETTQAGIMRNLARDLYVSSGQQLSETEYLVRISHKPLACWLWIGGLMMMFGGTIAAFSGLHNLRQQKA
KAHSSSSQVTSKYTEELA
>Mature_658_residues
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLISFLLDDFSVAYVANHSNTQLA
TLYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPLFIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPVEGRD
LNPILQDIGLIFHPPMLFLGYVGLTITFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
FWDPVENASFIPWLVSTALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQSVHAFASDPTRGMSILFLLG
VFVCGALTLFALKAHLIKSKSDFALISRDSVMLLGNIVLIVAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSMFVPLTF
VAVLLMGAAPLIKWQQQTLNSLYPLLGLFAAAAVIGVLVAIQTRDGFNPWVWIGATSASWILLTLGYLMFNLRQQGLAVI
ANKAAMLIAHLGVAVTIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTVDVDATSYTAIQANIRVTDSDDNFIGYI
TPQRQTFKTNAMETTQAGIMRNLARDLYVSSGQQLSETEYLVRISHKPLACWLWIGGLMMMFGGTIAAFSGLHNLRQQKA
KAHSSSSQVTSKYTEELA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=646, Percent_Identity=43.0340557275542, Blast_Score=493, Evalue=1e-140,
Organism=Escherichia coli, GI1790511, Length=576, Percent_Identity=35.7638888888889, Blast_Score=300, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72130; Mature: 72130

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLDDFSVAYVANHSNTQLATLYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPL
HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
FIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPVEGRDLNPILQDIGLIFHPPMLFLG
HHHHHHHHHHHHHHCHHEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
YVGLTITFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
HHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
FWDPVENASFIPWLVSTALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQ
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFASDPTRGMSILFLLGVFVCGALTLFALKAHLIKSKSDFALISRDSVMLLGNIVLI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
VAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSMFVPLTFVAVLLMGAAPLIKWQQQTLN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SLYPLLGLFAAAAVIGVLVAIQTRDGFNPWVWIGATSASWILLTLGYLMFNLRQQGLAVI
HHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHH
ANKAAMLIAHLGVAVTIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTVDVDATSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCE
TAIQANIRVTDSDDNFIGYITPQRQTFKTNAMETTQAGIMRNLARDLYVSSGQQLSETEY
EEEEEEEEEECCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LVRISHKPLACWLWIGGLMMMFGGTIAAFSGLHNLRQQKAKAHSSSSQVTSKYTEELA
EEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIPELGLIFLIISTVTAVLLAFIPLYASYTKNHYLFSYVKTLTALMTVTISASILCLLIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLDDFSVAYVANHSNTQLATLYKVAAVWGSHEGSMLFWVVSIAIWGCLIVFSSRYQDPL
HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
FIGRMIAILAFVIAGFNLFMLFTSNPFARLLPNFPVEGRDLNPILQDIGLIFHPPMLFLG
HHHHHHHHHHHHHHCHHEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
YVGLTITFAAAIAALLGGKFTQQHAGYLRPWVLMAWVFLTGGNAFGSWWAYNELGWGGWW
HHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
FWDPVENASFIPWLVSTALLHSVVLSQQRSSFKITTLLLCLLAFSLSLLGTFLVRSGIVQ
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFASDPTRGMSILFLLGVFVCGALTLFALKAHLIKSKSDFALISRDSVMLLGNIVLI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
VAAISVLLGTFYPLLFELLNLGTLSVGAPYFNSMFVPLTFVAVLLMGAAPLIKWQQQTLN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SLYPLLGLFAAAAVIGVLVAIQTRDGFNPWVWIGATSASWILLTLGYLMFNLRQQGLAVI
HHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHH
ANKAAMLIAHLGVAVTIIGATAVSNFETQELLRMGPGQGKVVAGYTFVYEDTVDVDATSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCE
TAIQANIRVTDSDDNFIGYITPQRQTFKTNAMETTQAGIMRNLARDLYVSSGQQLSETEY
EEEEEEEEEECCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LVRISHKPLACWLWIGGLMMMFGGTIAAFSGLHNLRQQKAKAHSSSSQVTSKYTEELA
EEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]