Click here to switch to the map view.

The map label for this gene is ccmH [H]

Identifier: 167622489

GI number: 167622489

Start: 660968

End: 661414

Strand: Reverse

Name: ccmH [H]

Synonym: Shal_0549

Alternate gene names: 167622489

Gene position: 661414-660968 (Counterclockwise)

Preceding gene: 167622490

Following gene: 167622488

Centisome position: 12.65

GC content: 45.86

Gene sequence:

>447_bases
ATGAGCAAAGCATACACGTCGACGTTAATGCGCTTACTTGCAGGCCTAGCCATATTGCTTTGCATAAGCATCTCTGCGCA
AGCGGCGAGCGATAAAATCCATTACACCCAGGACCAAATTCGCGATTTGGGTTTTGAGATTGCCCATGAGCTACGCTGTC
CAATGTCTGTTAATCAAAACCTATTTGACTCAAGTGCACCTATCGCCAGCGAGCTTAAGGGGCAGATTTTTTTGATGCTA
GATCAAGGCGAGTCTAAGGCTGAGATCATCGATTTTTTAGTGCAGCGTTACGGCGAAAAAATCCGTTACCAGCCAAGTTT
TTCAAGCGCAACGGCCCTGCTCTGGTTTGGTCCATTACTCCTTCTATTCGGCATAATCGCCTTCGCTGCGATTTGGATCC
GTGAACAACGTAAACATCAAGATATTAAGGCTAACACCCATGAATAA

Upstream 100 bases:

>100_bases
CTATTGCGGCTTTTTCAGGCTTACATAACCTCCGTCAGCAAAAAGCAAAGGCTCACTCCTCGTCCTCACAAGTCACATCT
AAGTATACCGAGGAATTAGC

Downstream 100 bases:

>100_bases
AACACATTTACTGAGCTGCTTACTGGTTTTCTCATCCCTGCTTATACCAGCACAAGCTCAAGTCGCCTCAAATAAGGTTT
ATAGCACAGGTAAAGCCATT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSKAYTSTLMRLLAGLAILLCISISAQAASDKIHYTQDQIRDLGFEIAHELRCPMSVNQNLFDSSAPIASELKGQIFLML
DQGESKAEIIDFLVQRYGEKIRYQPSFSSATALLWFGPLLLLFGIIAFAAIWIREQRKHQDIKANTHE

Sequences:

>Translated_148_residues
MSKAYTSTLMRLLAGLAILLCISISAQAASDKIHYTQDQIRDLGFEIAHELRCPMSVNQNLFDSSAPIASELKGQIFLML
DQGESKAEIIDFLVQRYGEKIRYQPSFSSATALLWFGPLLLLFGIIAFAAIWIREQRKHQDIKANTHE
>Mature_147_residues
SKAYTSTLMRLLAGLAILLCISISAQAASDKIHYTQDQIRDLGFEIAHELRCPMSVNQNLFDSSAPIASELKGQIFLMLD
QGESKAEIIDFLVQRYGEKIRYQPSFSSATALLWFGPLLLLFGIIAFAAIWIREQRKHQDIKANTHE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=112, Percent_Identity=36.6071428571429, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790512, Length=81, Percent_Identity=35.8024691358025, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16675; Mature: 16543

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAYTSTLMRLLAGLAILLCISISAQAASDKIHYTQDQIRDLGFEIAHELRCPMSVNQN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
LFDSSAPIASELKGQIFLMLDQGESKAEIIDFLVQRYGEKIRYQPSFSSATALLWFGPLL
CCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LLFGIIAFAAIWIREQRKHQDIKANTHE
HHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SKAYTSTLMRLLAGLAILLCISISAQAASDKIHYTQDQIRDLGFEIAHELRCPMSVNQN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
LFDSSAPIASELKGQIFLMLDQGESKAEIIDFLVQRYGEKIRYQPSFSSATALLWFGPLL
CCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LLFGIIAFAAIWIREQRKHQDIKANTHE
HHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA