| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is resA [H]
Identifier: 167622488
GI number: 167622488
Start: 660391
End: 660975
Strand: Reverse
Name: resA [H]
Synonym: Shal_0548
Alternate gene names: 167622488
Gene position: 660975-660391 (Counterclockwise)
Preceding gene: 167622489
Following gene: 167622486
Centisome position: 12.65
GC content: 44.79
Gene sequence:
>585_bases ATGAATAAAACACATTTACTGAGCTGCTTACTGGTTTTCTCATCCCTGCTTATACCAGCACAAGCTCAAGTCGCCTCAAA TAAGGTTTATAGCACAGGTAAAGCCATTGAGAAGCCGCTTATCATGTCACGCTTTATCGAGATGCAGTCGGCTCGCTCGG TACCTGAAGTGATGTTTACCGACACTAAAGGTGAGCAAATTAGCTTAAAGCAATACAAAGGGAAATTAGTATTAGTAAAC CTTTGGGCAACGTGGTGCGCACCGTGTATCAAAGAGATCCCGCAGATGGAAAACATCCGCCAAGTTAATAAAAACAACAA CTTGGTTGTGGTTCCTATCTCAATTGACGAAGAGAGTGACAAGGTACAGGCCTTCTTAGAACGCCATGAACTTGGCCATT ACCAGACTTGGTTAGATCCTCAGAAAACCATCGACCAAATTATGCCAGCCGACGTGGTACCTGCAACTTACGTGTTTGAC GGCTCAGGCAACCTAATAGGCTTTTTACGTGGTTATCTTGATTGGGGCGACAAAGAAGTGCAGCCGTATCTTGAGAAGCT AACGGCAAAGTACGCGCATCGTTAG
Upstream 100 bases:
>100_bases CTCTGGTTTGGTCCATTACTCCTTCTATTCGGCATAATCGCCTTCGCTGCGATTTGGATCCGTGAACAACGTAAACATCA AGATATTAAGGCTAACACCC
Downstream 100 bases:
>100_bases TTCTAGGATCAAGCTAAGACGGTAATGCCGATAGGGGCTGAGACGGAAAGGCAGGATCAAAACCCATTGTAGGTCGGCGT TTATGCCGTCTTTTGACTGT
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MNKTHLLSCLLVFSSLLIPAQAQVASNKVYSTGKAIEKPLIMSRFIEMQSARSVPEVMFTDTKGEQISLKQYKGKLVLVN LWATWCAPCIKEIPQMENIRQVNKNNNLVVVPISIDEESDKVQAFLERHELGHYQTWLDPQKTIDQIMPADVVPATYVFD GSGNLIGFLRGYLDWGDKEVQPYLEKLTAKYAHR
Sequences:
>Translated_194_residues MNKTHLLSCLLVFSSLLIPAQAQVASNKVYSTGKAIEKPLIMSRFIEMQSARSVPEVMFTDTKGEQISLKQYKGKLVLVN LWATWCAPCIKEIPQMENIRQVNKNNNLVVVPISIDEESDKVQAFLERHELGHYQTWLDPQKTIDQIMPADVVPATYVFD GSGNLIGFLRGYLDWGDKEVQPYLEKLTAKYAHR >Mature_194_residues MNKTHLLSCLLVFSSLLIPAQAQVASNKVYSTGKAIEKPLIMSRFIEMQSARSVPEVMFTDTKGEQISLKQYKGKLVLVN LWATWCAPCIKEIPQMENIRQVNKNNNLVVVPISIDEESDKVQAFLERHELGHYQTWLDPQKTIDQIMPADVVPATYVFD GSGNLIGFLRGYLDWGDKEVQPYLEKLTAKYAHR
Specific function: Thiol-disulfide oxidoreductase which is required in disulfide reduction during c-type cytochrome synthesis. May accept reducing equivalents from CcdA, leading to breakage of disulfide bonds in apocytochrome c; following this reduction heme can be covalent
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein. Note=The thioredoxin-like motif is exposed on the outside of the membrane (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: NA
Molecular weight: Translated: 22056; Mature: 22056
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTHLLSCLLVFSSLLIPAQAQVASNKVYSTGKAIEKPLIMSRFIEMQSARSVPEVMFT CCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEE DTKGEQISLKQYKGKLVLVNLWATWCAPCIKEIPQMENIRQVNKNNNLVVVPISIDEESD CCCCCEEEHHHHCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCHH KVQAFLERHELGHYQTWLDPQKTIDQIMPADVVPATYVFDGSGNLIGFLRGYLDWGDKEV HHHHHHHHHHCCCHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHH QPYLEKLTAKYAHR HHHHHHHHHHHCCC >Mature Secondary Structure MNKTHLLSCLLVFSSLLIPAQAQVASNKVYSTGKAIEKPLIMSRFIEMQSARSVPEVMFT CCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEE DTKGEQISLKQYKGKLVLVNLWATWCAPCIKEIPQMENIRQVNKNNNLVVVPISIDEESD CCCCCEEEHHHHCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCHH KVQAFLERHELGHYQTWLDPQKTIDQIMPADVVPATYVFDGSGNLIGFLRGYLDWGDKEV HHHHHHHHHHCCCHHHCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHH QPYLEKLTAKYAHR HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA