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The map label for this gene is ompA [H]

Identifier: 167622471

GI number: 167622471

Start: 641159

End: 642199

Strand: Reverse

Name: ompA [H]

Synonym: Shal_0531

Alternate gene names: 167622471

Gene position: 642199-641159 (Counterclockwise)

Preceding gene: 167622472

Following gene: 167622470

Centisome position: 12.29

GC content: 46.69

Gene sequence:

>1041_bases
ATGATGAACAAGACACTAATTGCACTAGCATTAATGGGTACATGCGGCTATGCCAATGCAGCCGATATCGATAACACTTG
GTACATAGGTGCAGGCGCAGGTCAAAGCAACTATGAGTCAGTTGACGCCGCTAGCCACCTAGGTGACGACAGCGATTTAG
CTTGGAACGCCCTAGTAGGTTATCAGCTAAACAAATACTTGGCCTTCGAAGCGGGTTGGCAAGATCTTGGCACTAACGAT
GACACTCACCTTTGGGGTGGTTTAGACGGCAGCCAAGAGATTGACGTTGACGGCTTTACTCTTGGCGTTGTGGGTACCTT
ACCACTGTCTGAAAAGTGGTTCTTAACTGGTGAAGCGGGTGCTTATCAATATCACTTAGCACACCAAATGAGTGCTAATA
AATATGTGAGTGCTACCGATACCGCTCCTTACTTTGGTGCGGGTGTGGGTTACAACATCACCGATTCTTTAGCTATTTCA
GCTAAGTACCGCCGCTTTGCCAATATCGATGAAACGGCATGGAACACGGCAAACATGGACGCACAGACAGTGGGTCTACA
GCTAACTTACCGTTTTGGTGTTAAAGCTGCGACCACAACTGCAGTTGTACTACCGGCTGTGATTGAAAAGCAGACTAAGC
CAATGCCTCGCCCAGAACCAAAGCCTGAGCCTAAGTATGAAATTCACACTGAAAAAAGCAGCGTAGCCGTACTATTTAGC
TTCGACTCTTCAGAGCTAACTAGCGCAGCCAAGGCCAAGCTAGACCAGGTTATCCAGCTATCAAAGAGCAAAGATCAAGA
CGTTATCTTGCTTAATGGTCAATCTGATAACCAAGGTGATAGCCAATACAACCTTAAGCTATCTGAAAAGCGTGTGCAGC
ACGTAGAAGCCTACTTAGTTTCTCACGGCGTAGAGGTGAAAAAAATCGACACTCAAGCCGTTGGTGAGCAAGATGCCCAC
GCTAATTTACGTAAAGACCGCGCACTAGAGCGCCGCGTAATAGTGACACTAACAAGCCAAGAAAAAGTATTAGCTTCTTA
A

Upstream 100 bases:

>100_bases
AATAATCATTATTGCATTTACTCTATCGCTCTAATTTAGCCGATCCCGCAAAATGCGCTCCATTGAAATGAGAGACGAAT
TAAAACTCACTGGAGATAAC

Downstream 100 bases:

>100_bases
GCTGAACTTTACAAAATTAGTATCACCAATAGGGACCCGACGTCGCTAGGATGGCGAAACGATACACTAGGATCCCTTAA
ATCTTGTCATGCCCCTTGGC

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MMNKTLIALALMGTCGYANAADIDNTWYIGAGAGQSNYESVDAASHLGDDSDLAWNALVGYQLNKYLAFEAGWQDLGTND
DTHLWGGLDGSQEIDVDGFTLGVVGTLPLSEKWFLTGEAGAYQYHLAHQMSANKYVSATDTAPYFGAGVGYNITDSLAIS
AKYRRFANIDETAWNTANMDAQTVGLQLTYRFGVKAATTTAVVLPAVIEKQTKPMPRPEPKPEPKYEIHTEKSSVAVLFS
FDSSELTSAAKAKLDQVIQLSKSKDQDVILLNGQSDNQGDSQYNLKLSEKRVQHVEAYLVSHGVEVKKIDTQAVGEQDAH
ANLRKDRALERRVIVTLTSQEKVLAS

Sequences:

>Translated_346_residues
MMNKTLIALALMGTCGYANAADIDNTWYIGAGAGQSNYESVDAASHLGDDSDLAWNALVGYQLNKYLAFEAGWQDLGTND
DTHLWGGLDGSQEIDVDGFTLGVVGTLPLSEKWFLTGEAGAYQYHLAHQMSANKYVSATDTAPYFGAGVGYNITDSLAIS
AKYRRFANIDETAWNTANMDAQTVGLQLTYRFGVKAATTTAVVLPAVIEKQTKPMPRPEPKPEPKYEIHTEKSSVAVLFS
FDSSELTSAAKAKLDQVIQLSKSKDQDVILLNGQSDNQGDSQYNLKLSEKRVQHVEAYLVSHGVEVKKIDTQAVGEQDAH
ANLRKDRALERRVIVTLTSQEKVLAS
>Mature_346_residues
MMNKTLIALALMGTCGYANAADIDNTWYIGAGAGQSNYESVDAASHLGDDSDLAWNALVGYQLNKYLAFEAGWQDLGTND
DTHLWGGLDGSQEIDVDGFTLGVVGTLPLSEKWFLTGEAGAYQYHLAHQMSANKYVSATDTAPYFGAGVGYNITDSLAIS
AKYRRFANIDETAWNTANMDAQTVGLQLTYRFGVKAATTTAVVLPAVIEKQTKPMPRPEPKPEPKYEIHTEKSSVAVLFS
FDSSELTSAAKAKLDQVIQLSKSKDQDVILLNGQSDNQGDSQYNLKLSEKRVQHVEAYLVSHGVEVKKIDTQAVGEQDAH
ANLRKDRALERRVIVTLTSQEKVLAS

Specific function: Required for the action of colicins K and L and for the stabilization of mating aggregates in conjugation. Serves as a receptor for a number of T-even like phages. Also acts as a porin with low permeability that allows slow penetration of small solutes [H

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=351, Percent_Identity=30.4843304843305, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR002368
- InterPro:   IPR006690
- InterPro:   IPR000498
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA; PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 37707; Mature: 37707

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKTLIALALMGTCGYANAADIDNTWYIGAGAGQSNYESVDAASHLGDDSDLAWNALVG
CCCCCEEEEEEHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCEEHEEEC
YQLNKYLAFEAGWQDLGTNDDTHLWGGLDGSQEIDVDGFTLGVVGTLPLSEKWFLTGEAG
EECCEEEEEECCCHHCCCCCCCEEECCCCCCCEECCCCEEEEEEEECCCCCEEEEECCCC
AYQYHLAHQMSANKYVSATDTAPYFGAGVGYNITDSLAISAKYRRFANIDETAWNTANMD
CEEEEEHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCHHCCCCCCCC
AQTVGLQLTYRFGVKAATTTAVVLPAVIEKQTKPMPRPEPKPEPKYEIHTEKSSVAVLFS
CEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEE
FDSSELTSAAKAKLDQVIQLSKSKDQDVILLNGQSDNQGDSQYNLKLSEKRVQHVEAYLV
ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHH
SHGVEVKKIDTQAVGEQDAHANLRKDRALERRVIVTLTSQEKVLAS
HCCCEEEEECHHHCCCCCHHCHHHHHHHHCCEEEEEEECCCHHHCC
>Mature Secondary Structure
MMNKTLIALALMGTCGYANAADIDNTWYIGAGAGQSNYESVDAASHLGDDSDLAWNALVG
CCCCCEEEEEEHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCEEHEEEC
YQLNKYLAFEAGWQDLGTNDDTHLWGGLDGSQEIDVDGFTLGVVGTLPLSEKWFLTGEAG
EECCEEEEEECCCHHCCCCCCCEEECCCCCCCEECCCCEEEEEEEECCCCCEEEEECCCC
AYQYHLAHQMSANKYVSATDTAPYFGAGVGYNITDSLAISAKYRRFANIDETAWNTANMD
CEEEEEHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCHHCCCCCCCC
AQTVGLQLTYRFGVKAATTTAVVLPAVIEKQTKPMPRPEPKPEPKYEIHTEKSSVAVLFS
CEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEE
FDSSELTSAAKAKLDQVIQLSKSKDQDVILLNGQSDNQGDSQYNLKLSEKRVQHVEAYLV
ECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHH
SHGVEVKKIDTQAVGEQDAHANLRKDRALERRVIVTLTSQEKVLAS
HCCCEEEEECHHHCCCCCHHCHHHHHHHHCCEEEEEEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6092858 [H]