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The map label for this gene is yggB [C]

Identifier: 167622472

GI number: 167622472

Start: 642441

End: 643277

Strand: Reverse

Name: yggB [C]

Synonym: Shal_0532

Alternate gene names: 167622472

Gene position: 643277-642441 (Counterclockwise)

Preceding gene: 167622474

Following gene: 167622471

Centisome position: 12.31

GC content: 43.73

Gene sequence:

>837_bases
ATGAATGATCAAGGGCTAGACCAAGAGATTGCACAACTGCAAAATGCTTATACTGCGATAACTGAGTTTCTGGTGCAATA
TAGCTTTAGTATTCTTGGTGCCGTCATCATCTTCTTAATTGGCCTGTGGATTGCGGCGAAAGCGGCTAACCTCGTCACGC
GTATTTTTGAAAAGCACAAAATAGATATTACCCTCAGTAATTTTACCAGCAACTTCGTCCGCATCTTAGTTATCGTGATG
GTGGGGGTGATAGCCTTAGGCAAGCTAGGTATTAGCGTCACTCCAATGGTGGCCGCTATTGGTGCAGCCTCTCTCGGTGC
TGGTTTAGCACTGCAGGGAATGCTATCTAACTATGCTGCCGGAATTACAATTATTGTCACTCGACCCTTTATTGTTGGTA
ATACCATCGAGATAAAAGGGGTCGGCGGCTTAGTTAAAGATATTCACCTTGGTATGACAGTGCTAACCAACGAGGAAGGT
GAAGAGATCAATATACCCAATAAACATATCGTCGGTGAGATCTTACATAACTCCTTCGCCAATAAGCTGGTCGAAACCAA
ATTTAATATCAGTTATCAGTCCGAGCCACAGCAGGTCATCGCCCTACTCACTAAAGTCTTGAGTGATAGCTCAAGAGTCT
ATCAAGGCACTAAAGCCCAAGTTGGCGTAAATGACTTTAACAGTATTGGGATTGAGATAGGGATTCGCTATTGGGTTGCG
ACCCAAAGTTATTACCAAGACAAATACCAAACCAATGCAGCACTATTTAAAGCACTAAAAGAGGCCGATATCGAGATCCC
CTACCCCGTTCAGCAGATCCATATTCAGCAGTCTTAA

Upstream 100 bases:

>100_bases
AAATGTACTCATAACCACTCACATACACGCAAATACTGAGTTACAAAATTGTTTATTGTCAGTAAGCTAATTGATAAGCG
TTTAATAGAGGATTGGATAA

Downstream 100 bases:

>100_bases
GTTAATTACCCCCATAGCGGCGTAAGATTCGCCGCTATCTATTGCTATTTTTCATCATCCAATCTACTTATGGAAAAAGC
CCACACACTCGCATTTTTGT

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNDQGLDQEIAQLQNAYTAITEFLVQYSFSILGAVIIFLIGLWIAAKAANLVTRIFEKHKIDITLSNFTSNFVRILVIVM
VGVIALGKLGISVTPMVAAIGAASLGAGLALQGMLSNYAAGITIIVTRPFIVGNTIEIKGVGGLVKDIHLGMTVLTNEEG
EEINIPNKHIVGEILHNSFANKLVETKFNISYQSEPQQVIALLTKVLSDSSRVYQGTKAQVGVNDFNSIGIEIGIRYWVA
TQSYYQDKYQTNAALFKALKEADIEIPYPVQQIHIQQS

Sequences:

>Translated_278_residues
MNDQGLDQEIAQLQNAYTAITEFLVQYSFSILGAVIIFLIGLWIAAKAANLVTRIFEKHKIDITLSNFTSNFVRILVIVM
VGVIALGKLGISVTPMVAAIGAASLGAGLALQGMLSNYAAGITIIVTRPFIVGNTIEIKGVGGLVKDIHLGMTVLTNEEG
EEINIPNKHIVGEILHNSFANKLVETKFNISYQSEPQQVIALLTKVLSDSSRVYQGTKAQVGVNDFNSIGIEIGIRYWVA
TQSYYQDKYQTNAALFKALKEADIEIPYPVQQIHIQQS
>Mature_278_residues
MNDQGLDQEIAQLQNAYTAITEFLVQYSFSILGAVIIFLIGLWIAAKAANLVTRIFEKHKIDITLSNFTSNFVRILVIVM
VGVIALGKLGISVTPMVAAIGAASLGAGLALQGMLSNYAAGITIIVTRPFIVGNTIEIKGVGGLVKDIHLGMTVLTNEEG
EEINIPNKHIVGEILHNSFANKLVETKFNISYQSEPQQVIALLTKVLSDSSRVYQGTKAQVGVNDFNSIGIEIGIRYWVA
TQSYYQDKYQTNAALFKALKEADIEIPYPVQQIHIQQS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=260, Percent_Identity=31.1538461538462, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1786670, Length=208, Percent_Identity=26.9230769230769, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI2367355, Length=254, Percent_Identity=20.4724409448819, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30327; Mature: 30327

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQGLDQEIAQLQNAYTAITEFLVQYSFSILGAVIIFLIGLWIAAKAANLVTRIFEKHK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
IDITLSNFTSNFVRILVIVMVGVIALGKLGISVTPMVAAIGAASLGAGLALQGMLSNYAA
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GITIIVTRPFIVGNTIEIKGVGGLVKDIHLGMTVLTNEEGEEINIPNKHIVGEILHNSFA
CEEEEEECCEEECCEEEEEECCCHHHHHHHCEEEEECCCCCEECCCCHHHHHHHHHHHHH
NKLVETKFNISYQSEPQQVIALLTKVLSDSSRVYQGTKAQVGVNDFNSIGIEIGIRYWVA
HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCEEEEEEEEEE
TQSYYQDKYQTNAALFKALKEADIEIPYPVQQIHIQQS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEECC
>Mature Secondary Structure
MNDQGLDQEIAQLQNAYTAITEFLVQYSFSILGAVIIFLIGLWIAAKAANLVTRIFEKHK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
IDITLSNFTSNFVRILVIVMVGVIALGKLGISVTPMVAAIGAASLGAGLALQGMLSNYAA
EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GITIIVTRPFIVGNTIEIKGVGGLVKDIHLGMTVLTNEEGEEINIPNKHIVGEILHNSFA
CEEEEEECCEEECCEEEEEECCCHHHHHHHCEEEEECCCCCEECCCCHHHHHHHHHHHHH
NKLVETKFNISYQSEPQQVIALLTKVLSDSSRVYQGTKAQVGVNDFNSIGIEIGIRYWVA
HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCEEEEEEEEEE
TQSYYQDKYQTNAALFKALKEADIEIPYPVQQIHIQQS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]