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The map label for this gene is 167622454

Identifier: 167622454

GI number: 167622454

Start: 620220

End: 621074

Strand: Reverse

Name: 167622454

Synonym: Shal_0514

Alternate gene names: NA

Gene position: 621074-620220 (Counterclockwise)

Preceding gene: 167622455

Following gene: 167622453

Centisome position: 11.88

GC content: 36.37

Gene sequence:

>855_bases
ATGACTGGAGTTAGTAATCTTTTTTATCGTCAGTTCCCTTTGAAAAAGAGATCTGGCGGCATTCGTACCATAGAGTCCCC
GTATCCCAAATTAGCATATGTTCAGCGATGGATAAAAAATCATATATTGGAGATTAAACCAATTAGTAGCAATGCTTTAG
CGTATGTTCAAGGAAGCTCTCACATAGAGAACGCTAAACGGCATATTGGAGCAAAGGAATTACTAAAAATAGACTTAGTT
GATTTCTTTGAGTATATAAAGTTAAGCACAGTAAAGTCTATATTTACAGAGTGCGGATATACAGAAAAAGTAAGCCATCA
ACTTGCTAAATTATGCACACTTCGGGATAGGCTCCCTCAGGGAGCACCTTCAAGCCCAGTAATAAGTAATCTGGTACTTG
TTGAGCTTGATAAAAGACTACAAAGCATATCAAAGAAGCATGAGTTGGTTTATACCAGATACGCAGATGATTTGTGCTTC
TCAGGACACGCTATTTCGGATGAATTTTTCTCCTTAGTTAAAGATGAAATTGAGTCTGAGGGCTTCGTTGTAAATCAAAA
TAAATCTGGTGTTGTTCGAGGTCATAAACGAAAACTAATTACGGGACTAGTTGTTAGTGAGTATGGAGTTCGTGTTCCAA
AAAAAATGCGTAGAGAATATCGAAAGCAGGCTCACTATATGCTCAAGAATGGTATTGAACAGTTGAATGGTAATATGGGG
ATGCTTAATCCACTTCATATTGATGAAGTAATAGGAAAAGGACAATATATACTCTCTGTAGAACCTGGTAATGCTTATGT
AAAAGACTCACTATGCATGTTGCTTAAGTTAAAAAATAAACTGCTAATCAAATAG

Upstream 100 bases:

>100_bases
AGAGTATGCTATAAATCTTGAATGCAACTCCGTACCTGTCATTTTCGAAATAGAGCACTTATCTAAGCTGTTAGGAATAG
AGCTATCTTTGGTTAGCCGC

Downstream 100 bases:

>100_bases
GTACAGCTTTTCATTACATGAGCTAATCTTTAGGTTTATTTTTTAGAACCTCCAACCAAAACTCAAGCCTGTTCAAGAGT
GTGTCAGCGGTTGCTCACTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Mx162-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTGVSNLFYRQFPLKKRSGGIRTIESPYPKLAYVQRWIKNHILEIKPISSNALAYVQGSSHIENAKRHIGAKELLKIDLV
DFFEYIKLSTVKSIFTECGYTEKVSHQLAKLCTLRDRLPQGAPSSPVISNLVLVELDKRLQSISKKHELVYTRYADDLCF
SGHAISDEFFSLVKDEIESEGFVVNQNKSGVVRGHKRKLITGLVVSEYGVRVPKKMRREYRKQAHYMLKNGIEQLNGNMG
MLNPLHIDEVIGKGQYILSVEPGNAYVKDSLCMLLKLKNKLLIK

Sequences:

>Translated_284_residues
MTGVSNLFYRQFPLKKRSGGIRTIESPYPKLAYVQRWIKNHILEIKPISSNALAYVQGSSHIENAKRHIGAKELLKIDLV
DFFEYIKLSTVKSIFTECGYTEKVSHQLAKLCTLRDRLPQGAPSSPVISNLVLVELDKRLQSISKKHELVYTRYADDLCF
SGHAISDEFFSLVKDEIESEGFVVNQNKSGVVRGHKRKLITGLVVSEYGVRVPKKMRREYRKQAHYMLKNGIEQLNGNMG
MLNPLHIDEVIGKGQYILSVEPGNAYVKDSLCMLLKLKNKLLIK
>Mature_283_residues
TGVSNLFYRQFPLKKRSGGIRTIESPYPKLAYVQRWIKNHILEIKPISSNALAYVQGSSHIENAKRHIGAKELLKIDLVD
FFEYIKLSTVKSIFTECGYTEKVSHQLAKLCTLRDRLPQGAPSSPVISNLVLVELDKRLQSISKKHELVYTRYADDLCFS
GHAISDEFFSLVKDEIESEGFVVNQNKSGVVRGHKRKLITGLVVSEYGVRVPKKMRREYRKQAHYMLKNGIEQLNGNMGM
LNPLHIDEVIGKGQYILSVEPGNAYVKDSLCMLLKLKNKLLIK

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 32324; Mature: 32193

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVSNLFYRQFPLKKRSGGIRTIESPYPKLAYVQRWIKNHILEIKPISSNALAYVQGSS
CCCHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEEECCH
HIENAKRHIGAKELLKIDLVDFFEYIKLSTVKSIFTECGYTEKVSHQLAKLCTLRDRLPQ
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
GAPSSPVISNLVLVELDKRLQSISKKHELVYTRYADDLCFSGHAISDEFFSLVKDEIESE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHCCCCCCCHHHHHHHHHHHCCC
GFVVNQNKSGVVRGHKRKLITGLVVSEYGVRVPKKMRREYRKQAHYMLKNGIEQLNGNMG
CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
MLNPLHIDEVIGKGQYILSVEPGNAYVKDSLCMLLKLKNKLLIK
CCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TGVSNLFYRQFPLKKRSGGIRTIESPYPKLAYVQRWIKNHILEIKPISSNALAYVQGSS
CCHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEEECCH
HIENAKRHIGAKELLKIDLVDFFEYIKLSTVKSIFTECGYTEKVSHQLAKLCTLRDRLPQ
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
GAPSSPVISNLVLVELDKRLQSISKKHELVYTRYADDLCFSGHAISDEFFSLVKDEIESE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHCCCCCCCHHHHHHHHHHHCCC
GFVVNQNKSGVVRGHKRKLITGLVVSEYGVRVPKKMRREYRKQAHYMLKNGIEQLNGNMG
CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
MLNPLHIDEVIGKGQYILSVEPGNAYVKDSLCMLLKLKNKLLIK
CCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2465092; 2465091 [H]