| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622455
Identifier: 167622455
GI number: 167622455
Start: 621748
End: 622620
Strand: Reverse
Name: 167622455
Synonym: Shal_0515
Alternate gene names: NA
Gene position: 622620-621748 (Counterclockwise)
Preceding gene: 167622458
Following gene: 167622454
Centisome position: 11.91
GC content: 36.54
Gene sequence:
>873_bases ATGACTATATACACCCCTAGAAATTCAATTGAGTCAGACTTTTATGAAGTAGGAGATTTACAAGCTCAAATCTCTTGGCT GAATGACCCGCGCTATGAAAAGGGACTTCACGGACTTTTGGAAGAGTACAAATCACCGGAAGAACGTCAGGCGCTCATGA TACTATTTGAGAGGTTTATCCATCATGAGCAGAGGGATAGACTTGATGCTGTAGATTATCTTGTTGAGGTCATCCAAACA AAGGGATTTACACATGAAGACACTTTGTTAGTAGCGACTTCAGACGGAAAGGAGTCTGATGGCTCAACGGCTGGTTTATA CAACTTCAAGGAGGCACTCTCTCAAATAGATCAGCACTGGAAAGAAAAAAATTTAGTACCTTCTCTTGCCGAGTCTTTTG ACAAATTTAAAAACCATAATATTAAAAACGTTGTAATATTTGATGACTTCATCGGTAGCGGAAAGACAATAGTTAAAAAG GTCAATGAGTTTCGCCAAGAGATGCGAAATAGGGATATATTACATGTCAAAATTTATGTTTTTTCATATGTAGGTATGAA ATTTGGAGTTAAGCACGCTACTCAAAAATTGAGTATAGAAATATTTTGTCCGCTTCAACTTCAGAAAGGTATATCTGATT ATAAAAATAGTAACCCTGAAATTCTGAAATCTACGGTTTTGGGTATGGAGAACAAACTTGGGAAAAATTGGAAGAAATTA CAGCTTCAGGATTTTAAACTTGGTTATAAAGAATCGGAATCTCTGTACCAGCTATTCCGTTCAAATTGCTCCAATAATGT TTTCCCTATTTTTTGGTGGCCTAAGAATGTTTCAAAGAAGCATCGAGTAACTATCTTCAACAGGCTTTACTAG
Upstream 100 bases:
>100_bases GAAAGCATGACCTTTTTAATAAAATCGGTCCCCCTTTATTTTAAGTAGTGAATTGCATATTATCTCTTTAATATATTGGA GTTTTTATAATTAGGCTGTA
Downstream 100 bases:
>100_bases ATGATTAATATTCACATATATTTGGCTATTCGCCTGATTAGAACTGGAAAATCAAGTACACTTTATGAGCTTCATTGCCG CTTTCGCTTAACATATACAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTIYTPRNSIESDFYEVGDLQAQISWLNDPRYEKGLHGLLEEYKSPEERQALMILFERFIHHEQRDRLDAVDYLVEVIQT KGFTHEDTLLVATSDGKESDGSTAGLYNFKEALSQIDQHWKEKNLVPSLAESFDKFKNHNIKNVVIFDDFIGSGKTIVKK VNEFRQEMRNRDILHVKIYVFSYVGMKFGVKHATQKLSIEIFCPLQLQKGISDYKNSNPEILKSTVLGMENKLGKNWKKL QLQDFKLGYKESESLYQLFRSNCSNNVFPIFWWPKNVSKKHRVTIFNRLY
Sequences:
>Translated_290_residues MTIYTPRNSIESDFYEVGDLQAQISWLNDPRYEKGLHGLLEEYKSPEERQALMILFERFIHHEQRDRLDAVDYLVEVIQT KGFTHEDTLLVATSDGKESDGSTAGLYNFKEALSQIDQHWKEKNLVPSLAESFDKFKNHNIKNVVIFDDFIGSGKTIVKK VNEFRQEMRNRDILHVKIYVFSYVGMKFGVKHATQKLSIEIFCPLQLQKGISDYKNSNPEILKSTVLGMENKLGKNWKKL QLQDFKLGYKESESLYQLFRSNCSNNVFPIFWWPKNVSKKHRVTIFNRLY >Mature_289_residues TIYTPRNSIESDFYEVGDLQAQISWLNDPRYEKGLHGLLEEYKSPEERQALMILFERFIHHEQRDRLDAVDYLVEVIQTK GFTHEDTLLVATSDGKESDGSTAGLYNFKEALSQIDQHWKEKNLVPSLAESFDKFKNHNIKNVVIFDDFIGSGKTIVKKV NEFRQEMRNRDILHVKIYVFSYVGMKFGVKHATQKLSIEIFCPLQLQKGISDYKNSNPEILKSTVLGMENKLGKNWKKLQ LQDFKLGYKESESLYQLFRSNCSNNVFPIFWWPKNVSKKHRVTIFNRLY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34019; Mature: 33888
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIYTPRNSIESDFYEVGDLQAQISWLNDPRYEKGLHGLLEEYKSPEERQALMILFERFI CEEECCCCCHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH HHEQRDRLDAVDYLVEVIQTKGFTHEDTLLVATSDGKESDGSTAGLYNFKEALSQIDQHW HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH KEKNLVPSLAESFDKFKNHNIKNVVIFDDFIGSGKTIVKKVNEFRQEMRNRDILHVKIYV HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHH FSYVGMKFGVKHATQKLSIEIFCPLQLQKGISDYKNSNPEILKSTVLGMENKLGKNWKKL HHHHHHHHHHHHHHHEEEEEEEECHHHHHCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHE QLQDFKLGYKESESLYQLFRSNCSNNVFPIFWWPKNVSKKHRVTIFNRLY EHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHEEHHHHCC >Mature Secondary Structure TIYTPRNSIESDFYEVGDLQAQISWLNDPRYEKGLHGLLEEYKSPEERQALMILFERFI EEECCCCCHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH HHEQRDRLDAVDYLVEVIQTKGFTHEDTLLVATSDGKESDGSTAGLYNFKEALSQIDQHW HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH KEKNLVPSLAESFDKFKNHNIKNVVIFDDFIGSGKTIVKKVNEFRQEMRNRDILHVKIYV HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHH FSYVGMKFGVKHATQKLSIEIFCPLQLQKGISDYKNSNPEILKSTVLGMENKLGKNWKKL HHHHHHHHHHHHHHHEEEEEEEECHHHHHCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHE QLQDFKLGYKESESLYQLFRSNCSNNVFPIFWWPKNVSKKHRVTIFNRLY EHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA