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The map label for this gene is rarD [H]

Identifier: 167622374

GI number: 167622374

Start: 508207

End: 509094

Strand: Reverse

Name: rarD [H]

Synonym: Shal_0434

Alternate gene names: 167622374

Gene position: 509094-508207 (Counterclockwise)

Preceding gene: 167622375

Following gene: 167622368

Centisome position: 9.74

GC content: 44.03

Gene sequence:

>888_bases
ATGCAAGAAACTGAATACCGTAAAGGCATAATCTATGCAATTTGCGCCTATACCCTTTGGGGATTTGCAGCGCTTTATTT
CAAGCTGCTCGACAAGGTACCCGCAGCAGAGATCTTATTACACCGAGTACTTTGGTCATTTGTCTTTGTTACTATTTTAA
TCGCACTTTTCGGTGGTTTTGCCCGACTGCGCAACCTGCTTAAACAACCCAAGCAGCTCGCTGTACTGTGTGTAACTTCG
GTATTGATTGCAGGTAACTGGCTACTATTTATCTGGGCGGTCAATAACGACCACATGCTCGATGCAAGTTTAGGCTATTT
CATAAATCCGCTGGTGAATGTCAGTCTAGCCATGATATTTCTAGGTGAGCGCCTACGTAAACTGCAATGGGCGGCAGTTG
CACTCGCAGCAACAGGTGTAATGATCCAGCTGATCTCATTTGGTTCAATTCCATTAGTGTCGCTAGGCTTAGCCTGTTCA
TTTGCTTTCTATGGCTTGCTACGTAAAAAAGTCAATGTCGACGCCAAGACAGGCTTACTAGTAGAAACCGCTATTTTGAT
GCCAATCGCGCTTATTTACCTGGTTACCAATATGGGAGATTCATTAACCCATCTGCTCACTAACGATTTGAATTTAAATC
TACTCTTAGTTGCAGCGGGTATCGTAACGACCATTCCTTTACTGTGCTTTGCCTCCGCAGCCGTTAGGATCCCATTTTCA
ATGCTAGGTTTCTTTCAATATATAGGCCCAAGCATTATGTTTGTGCTGGCTATCGCCTTGTTCAACGAGCCTTTCGATGC
GGAAAAAGGCATTACCTTCGCATTCATCTGGGCGGCACTGCTCCTGTTTACGGTAGATATGTTCTATAAACGAAAACCTA
AGCTATAA

Upstream 100 bases:

>100_bases
TCAAACAACAGCGGGCCATTTCAATAAAGTCGTTCACTGCTTGAGTCTATTGCTTAGCAAGACTACAATCTGCGGCTACT
TCCCTATTTAATACATTCCA

Downstream 100 bases:

>100_bases
CGCCTAACAAAAAAAGCGAACCTTATTCTGGTTCGCTTTTTTTTTTGGCTATCGACTCAATAACCTATCCGGCTCTTGTA
GACTCAATATGATCCGGTAT

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQETEYRKGIIYAICAYTLWGFAALYFKLLDKVPAAEILLHRVLWSFVFVTILIALFGGFARLRNLLKQPKQLAVLCVTS
VLIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIFLGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACS
FAFYGLLRKKVNVDAKTGLLVETAILMPIALIYLVTNMGDSLTHLLTNDLNLNLLLVAAGIVTTIPLLCFASAAVRIPFS
MLGFFQYIGPSIMFVLAIALFNEPFDAEKGITFAFIWAALLLFTVDMFYKRKPKL

Sequences:

>Translated_295_residues
MQETEYRKGIIYAICAYTLWGFAALYFKLLDKVPAAEILLHRVLWSFVFVTILIALFGGFARLRNLLKQPKQLAVLCVTS
VLIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIFLGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACS
FAFYGLLRKKVNVDAKTGLLVETAILMPIALIYLVTNMGDSLTHLLTNDLNLNLLLVAAGIVTTIPLLCFASAAVRIPFS
MLGFFQYIGPSIMFVLAIALFNEPFDAEKGITFAFIWAALLLFTVDMFYKRKPKL
>Mature_295_residues
MQETEYRKGIIYAICAYTLWGFAALYFKLLDKVPAAEILLHRVLWSFVFVTILIALFGGFARLRNLLKQPKQLAVLCVTS
VLIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIFLGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACS
FAFYGLLRKKVNVDAKTGLLVETAILMPIALIYLVTNMGDSLTHLLTNDLNLNLLLVAAGIVTTIPLLCFASAAVRIPFS
MLGFFQYIGPSIMFVLAIALFNEPFDAEKGITFAFIWAALLLFTVDMFYKRKPKL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=292, Percent_Identity=55.8219178082192, Blast_Score=345, Evalue=2e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32741; Mature: 32741

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQETEYRKGIIYAICAYTLWGFAALYFKLLDKVPAAEILLHRVLWSFVFVTILIALFGGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLRNLLKQPKQLAVLCVTSVLIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIF
HHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
LGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACSFAFYGLLRKKVNVDAKTGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VETAILMPIALIYLVTNMGDSLTHLLTNDLNLNLLLVAAGIVTTIPLLCFASAAVRIPFS
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
MLGFFQYIGPSIMFVLAIALFNEPFDAEKGITFAFIWAALLLFTVDMFYKRKPKL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQETEYRKGIIYAICAYTLWGFAALYFKLLDKVPAAEILLHRVLWSFVFVTILIALFGGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLRNLLKQPKQLAVLCVTSVLIAGNWLLFIWAVNNDHMLDASLGYFINPLVNVSLAMIF
HHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
LGERLRKLQWAAVALAATGVMIQLISFGSIPLVSLGLACSFAFYGLLRKKVNVDAKTGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VETAILMPIALIYLVTNMGDSLTHLLTNDLNLNLLLVAAGIVTTIPLLCFASAAVRIPFS
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
MLGFFQYIGPSIMFVLAIALFNEPFDAEKGITFAFIWAALLLFTVDMFYKRKPKL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]