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The map label for this gene is 167622342

Identifier: 167622342

GI number: 167622342

Start: 471098

End: 471766

Strand: Reverse

Name: 167622342

Synonym: Shal_0402

Alternate gene names: NA

Gene position: 471766-471098 (Counterclockwise)

Preceding gene: 167622343

Following gene: 167622341

Centisome position: 9.03

GC content: 41.26

Gene sequence:

>669_bases
ATGAATAAACCACCAATTGAGATAGTTTATGACGATAGAGAACGTGCGGAGATATTGATTAAGCAACTATCAAAACAAAC
GGATCTTCGTTTAGTCAGAAAACGACTAAACTTGGGAGATTATCAGATAAACGAATGGCTTATTGAAAGAAAAACACTCT
CAGATTTCGTTATTTCACTTTGTGATGGCAGACTATTTTCACAGGTATCAAGGCTATCAAAAAGCCCTAATAATACAGCA
CTGCTTATTGAGGGTTCATCGCGAGATATCGCCGCTTATGGTATTACTCGAGAGGCTGTAATGGGTGCGCTATGCTCTAT
TGCTATCAACTTCAACATGCCTATCTTACGCAGTTTATCTCAGGCAGAGTCGGCTAAAATCCTCTACTTCTGTGCCACTC
AATTAAATAGCTGGGAAACAGGAGTCATCTCCAACGGCAGAAAACCTAAACGTCACAAAAACCGACAACTCTTCATACTC
CAAAGTCTTCCTCAAGTTGGTCCAAAACTGGCTAAACGTTTATTAATACATTTCGAGAGTATTGAAGCGGTCTTCACTGC
CCCTGAAGAGGAACTGTTAAAGGTAGAGGGGATCGGGCAAGAGAAGGCTAGAGGGATACGAGGAATATTAACGTCAACGA
ACAAAAGAGGCCACAACCAACCCGATTAA

Upstream 100 bases:

>100_bases
AGTTCGCTTAATGGCATTTTGCTTCGCAAAAAATATCCCCTATCGTTACAATCACTAAACTAGACTTAATCCTAGTCAAT
GGATTGATTAAGTATTCAGG

Downstream 100 bases:

>100_bases
GCAGTATTGCCTACATAAGGCAAACACATACAACATACTCGCAACAAAATAATCACCAGCTGATACAGATATAGGAGGCG
AGCACAATGCTATGTTTGAT

Product: ERCC4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNKPPIEIVYDDRERAEILIKQLSKQTDLRLVRKRLNLGDYQINEWLIERKTLSDFVISLCDGRLFSQVSRLSKSPNNTA
LLIEGSSRDIAAYGITREAVMGALCSIAINFNMPILRSLSQAESAKILYFCATQLNSWETGVISNGRKPKRHKNRQLFIL
QSLPQVGPKLAKRLLIHFESIEAVFTAPEEELLKVEGIGQEKARGIRGILTSTNKRGHNQPD

Sequences:

>Translated_222_residues
MNKPPIEIVYDDRERAEILIKQLSKQTDLRLVRKRLNLGDYQINEWLIERKTLSDFVISLCDGRLFSQVSRLSKSPNNTA
LLIEGSSRDIAAYGITREAVMGALCSIAINFNMPILRSLSQAESAKILYFCATQLNSWETGVISNGRKPKRHKNRQLFIL
QSLPQVGPKLAKRLLIHFESIEAVFTAPEEELLKVEGIGQEKARGIRGILTSTNKRGHNQPD
>Mature_222_residues
MNKPPIEIVYDDRERAEILIKQLSKQTDLRLVRKRLNLGDYQINEWLIERKTLSDFVISLCDGRLFSQVSRLSKSPNNTA
LLIEGSSRDIAAYGITREAVMGALCSIAINFNMPILRSLSQAESAKILYFCATQLNSWETGVISNGRKPKRHKNRQLFIL
QSLPQVGPKLAKRLLIHFESIEAVFTAPEEELLKVEGIGQEKARGIRGILTSTNKRGHNQPD

Specific function: Unknown

COG id: COG1948

COG function: function code L; ERCC4-type nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR020819
- InterPro:   IPR006166
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR011335
- InterPro:   IPR010994 [H]

Pfam domain/function: PF00270 DEAD; PF02732 ERCC4; PF00271 Helicase_C; PF00633 HHH [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 25099; Mature: 25099

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPPIEIVYDDRERAEILIKQLSKQTDLRLVRKRLNLGDYQINEWLIERKTLSDFVISL
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
CDGRLFSQVSRLSKSPNNTALLIEGSSRDIAAYGITREAVMGALCSIAINFNMPILRSLS
HCCHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCHHHHHHH
QAESAKILYFCATQLNSWETGVISNGRKPKRHKNRQLFILQSLPQVGPKLAKRLLIHFES
HHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHCHHCCHHHHHHHHHHHHH
IEAVFTAPEEELLKVEGIGQEKARGIRGILTSTNKRGHNQPD
HHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNKPPIEIVYDDRERAEILIKQLSKQTDLRLVRKRLNLGDYQINEWLIERKTLSDFVISL
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
CDGRLFSQVSRLSKSPNNTALLIEGSSRDIAAYGITREAVMGALCSIAINFNMPILRSLS
HCCHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCHHHHHHH
QAESAKILYFCATQLNSWETGVISNGRKPKRHKNRQLFILQSLPQVGPKLAKRLLIHFES
HHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEHHCHHCCHHHHHHHHHHHHH
IEAVFTAPEEELLKVEGIGQEKARGIRGILTSTNKRGHNQPD
HHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]